miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18867 3' -59 NC_004683.1 + 7610 0.66 0.557369
Target:  5'- cGGGGCAggugcaggGGCACCggCCGUcgUGGUgCGGGc -3'
miRNA:   3'- -UCCUGU--------UCGUGG--GGUAa-GCCGgGCCC- -5'
18867 3' -59 NC_004683.1 + 4629 0.66 0.556323
Target:  5'- cAGGGCGAGUACCgCCGaacgccggaaUCGGCCguccuugagcgccUGGGc -3'
miRNA:   3'- -UCCUGUUCGUGG-GGUa---------AGCCGG-------------GCCC- -5'
18867 3' -59 NC_004683.1 + 53092 0.66 0.546934
Target:  5'- cGGAaa--CGCCCCGagccaUCGGCCgGGGc -3'
miRNA:   3'- uCCUguucGUGGGGUa----AGCCGGgCCC- -5'
18867 3' -59 NC_004683.1 + 5109 0.66 0.540703
Target:  5'- aAGGGCGAGCugcguGCCCgGgcgcugUCGGCCaucgagaagaugcaGGGc -3'
miRNA:   3'- -UCCUGUUCG-----UGGGgUa-----AGCCGGg-------------CCC- -5'
18867 3' -59 NC_004683.1 + 40094 0.66 0.536562
Target:  5'- cAGcGGCGAGU-CCUCGccCGGCUCGGGc -3'
miRNA:   3'- -UC-CUGUUCGuGGGGUaaGCCGGGCCC- -5'
18867 3' -59 NC_004683.1 + 12699 0.66 0.536562
Target:  5'- cGGGCAcGGCAUCCuCGgcauccUCGGCgCgCGGGg -3'
miRNA:   3'- uCCUGU-UCGUGGG-GUa-----AGCCG-G-GCCC- -5'
18867 3' -59 NC_004683.1 + 13402 0.66 0.536562
Target:  5'- aGGGuggcccGCAGGCgGCCCCGUUCGcGCUCaacaccccaguGGGu -3'
miRNA:   3'- -UCC------UGUUCG-UGGGGUAAGC-CGGG-----------CCC- -5'
18867 3' -59 NC_004683.1 + 9413 0.66 0.526259
Target:  5'- gGGGAC----GCCCCAUUCGGCgaccaCGGu -3'
miRNA:   3'- -UCCUGuucgUGGGGUAAGCCGg----GCCc -5'
18867 3' -59 NC_004683.1 + 24485 0.66 0.526259
Target:  5'- cGGAUccGGCGCCCCAUggaacgUCGGaCCCa-- -3'
miRNA:   3'- uCCUGu-UCGUGGGGUA------AGCC-GGGccc -5'
18867 3' -59 NC_004683.1 + 5358 0.66 0.516031
Target:  5'- gGGGGCGGGCuugAUCgCGUcgagcUCGGCCUGGc -3'
miRNA:   3'- -UCCUGUUCG---UGGgGUA-----AGCCGGGCCc -5'
18867 3' -59 NC_004683.1 + 15078 0.66 0.515013
Target:  5'- cGGAuggcguagacgcuCGGGCGCCCC--UCGGCCUGc- -3'
miRNA:   3'- uCCU-------------GUUCGUGGGGuaAGCCGGGCcc -5'
18867 3' -59 NC_004683.1 + 46210 0.66 0.505884
Target:  5'- --uGCAcGCGCaggCGUUCGGUCCGGGg -3'
miRNA:   3'- uccUGUuCGUGgg-GUAAGCCGGGCCC- -5'
18867 3' -59 NC_004683.1 + 153 0.67 0.495824
Target:  5'- cGGGGCAAGCGCCUCGgcgUCGacacCCCa-- -3'
miRNA:   3'- -UCCUGUUCGUGGGGUa--AGCc---GGGccc -5'
18867 3' -59 NC_004683.1 + 46278 0.67 0.486848
Target:  5'- aGGGGCAaccAGCGuCCCgAUguugaccggcugacgCGGCCCGaGGc -3'
miRNA:   3'- -UCCUGU---UCGU-GGGgUAa--------------GCCGGGC-CC- -5'
18867 3' -59 NC_004683.1 + 37733 0.67 0.485855
Target:  5'- -cGACGcGCACCgCGUUCGaCCCGGcGg -3'
miRNA:   3'- ucCUGUuCGUGGgGUAAGCcGGGCC-C- -5'
18867 3' -59 NC_004683.1 + 18866 0.67 0.485855
Target:  5'- -cGACuucacGGCGCCCgacuucgauccgCAggaggCGGCCCGGGa -3'
miRNA:   3'- ucCUGu----UCGUGGG------------GUaa---GCCGGGCCC- -5'
18867 3' -59 NC_004683.1 + 51209 0.67 0.475983
Target:  5'- gAGcGCGAGCGCCCCug-UGGCgucgaaCGGGc -3'
miRNA:   3'- -UCcUGUUCGUGGGGuaaGCCGg-----GCCC- -5'
18867 3' -59 NC_004683.1 + 17299 0.67 0.465239
Target:  5'- cAGcGCAGGCgguucucaagaauGCCCCGUaCGGCCCGu- -3'
miRNA:   3'- -UCcUGUUCG-------------UGGGGUAaGCCGGGCcc -5'
18867 3' -59 NC_004683.1 + 8952 0.68 0.42821
Target:  5'- uGGugGAGCugCCCGgcgaGGCCgaCGGa -3'
miRNA:   3'- uCCugUUCGugGGGUaag-CCGG--GCCc -5'
18867 3' -59 NC_004683.1 + 24786 0.68 0.409909
Target:  5'- gAGGACGcgcucgAGCACCUC-UUCGGCgaCGGcGg -3'
miRNA:   3'- -UCCUGU------UCGUGGGGuAAGCCGg-GCC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.