miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18868 3' -57.5 NC_004683.1 + 20934 0.66 0.59132
Target:  5'- -gGAga-CGUCGGACAcaaUGAcGCGCCGu -3'
miRNA:   3'- aaCUacgGCGGCCUGU---ACUuCGCGGC- -5'
18868 3' -57.5 NC_004683.1 + 15927 0.66 0.580444
Target:  5'- cUGAUcaGCuCGCCGG-CGaGGuaGGCGCCGa -3'
miRNA:   3'- aACUA--CG-GCGGCCuGUaCU--UCGCGGC- -5'
18868 3' -57.5 NC_004683.1 + 4516 0.66 0.569611
Target:  5'- gUGAUGUCGCgCGGcACG-GGAGCaCCGc -3'
miRNA:   3'- aACUACGGCG-GCC-UGUaCUUCGcGGC- -5'
18868 3' -57.5 NC_004683.1 + 44125 0.66 0.558829
Target:  5'- cUGA-GCCGCUgugGGACGUGuucacCGCCGa -3'
miRNA:   3'- aACUaCGGCGG---CCUGUACuuc--GCGGC- -5'
18868 3' -57.5 NC_004683.1 + 44136 0.66 0.558829
Target:  5'- -aGcgGCCuGCCgGGACGUuGGccagcAGCGCCGc -3'
miRNA:   3'- aaCuaCGG-CGG-CCUGUA-CU-----UCGCGGC- -5'
18868 3' -57.5 NC_004683.1 + 25287 0.66 0.537445
Target:  5'- ----cGCUGCCGGGCcUGcAGGCGCa- -3'
miRNA:   3'- aacuaCGGCGGCCUGuAC-UUCGCGgc -5'
18868 3' -57.5 NC_004683.1 + 35303 0.66 0.537445
Target:  5'- aUGAUGCgCGCaguccacgGGAUAUGGA-CGCCGc -3'
miRNA:   3'- aACUACG-GCGg-------CCUGUACUUcGCGGC- -5'
18868 3' -57.5 NC_004683.1 + 21352 0.66 0.534261
Target:  5'- gUGGUGCCccuguucgucaccgGCgacUGGGCAUGcGGCGCUGa -3'
miRNA:   3'- aACUACGG--------------CG---GCCUGUACuUCGCGGC- -5'
18868 3' -57.5 NC_004683.1 + 39621 0.67 0.526859
Target:  5'- aUGAgGCCGCCGcGGaagAUGucGCGCCc -3'
miRNA:   3'- aACUaCGGCGGC-CUg--UACuuCGCGGc -5'
18868 3' -57.5 NC_004683.1 + 8018 0.67 0.526859
Target:  5'- -gGAUGCaGCCGGugAUGcgcaccgcggucGAGCGCg- -3'
miRNA:   3'- aaCUACGgCGGCCugUAC------------UUCGCGgc -5'
18868 3' -57.5 NC_004683.1 + 18152 0.67 0.505929
Target:  5'- ----gGCgGCCGGACcccGAAGCcGCCGu -3'
miRNA:   3'- aacuaCGgCGGCCUGua-CUUCG-CGGC- -5'
18868 3' -57.5 NC_004683.1 + 37860 0.67 0.505929
Target:  5'- -gGGUGUCGUCGG-CGUGAAGgugaGUCGg -3'
miRNA:   3'- aaCUACGGCGGCCuGUACUUCg---CGGC- -5'
18868 3' -57.5 NC_004683.1 + 32507 0.67 0.495598
Target:  5'- --cGUGCaGCCGGACGUGgcGCaGaCCGg -3'
miRNA:   3'- aacUACGgCGGCCUGUACuuCG-C-GGC- -5'
18868 3' -57.5 NC_004683.1 + 45670 0.67 0.495598
Target:  5'- ----gGCCGCCGGcACAUc-GGCGCUGu -3'
miRNA:   3'- aacuaCGGCGGCC-UGUAcuUCGCGGC- -5'
18868 3' -57.5 NC_004683.1 + 10496 0.68 0.475231
Target:  5'- -cGAUGCUG-CGGGCcgGcuucGCGCCGa -3'
miRNA:   3'- aaCUACGGCgGCCUGuaCuu--CGCGGC- -5'
18868 3' -57.5 NC_004683.1 + 38900 0.68 0.474224
Target:  5'- gUGGUGcCCGCCGGGgCGUcguuaggGAGGCuGCCc -3'
miRNA:   3'- aACUAC-GGCGGCCU-GUA-------CUUCG-CGGc -5'
18868 3' -57.5 NC_004683.1 + 21537 0.68 0.465205
Target:  5'- cUGGUGCCGCUacaucGACGUGAuccugcugGGCGgCGg -3'
miRNA:   3'- aACUACGGCGGc----CUGUACU--------UCGCgGC- -5'
18868 3' -57.5 NC_004683.1 + 3581 0.68 0.465205
Target:  5'- ---uUGCCGCCcGGCGUGuccGCGUCGg -3'
miRNA:   3'- aacuACGGCGGcCUGUACuu-CGCGGC- -5'
18868 3' -57.5 NC_004683.1 + 46207 0.68 0.465205
Target:  5'- -cGAUGCaCGCgcaggcguuCGGuCcgGggGCGCCGc -3'
miRNA:   3'- aaCUACG-GCG---------GCCuGuaCuuCGCGGC- -5'
18868 3' -57.5 NC_004683.1 + 43658 0.68 0.445491
Target:  5'- -cGGUGUgGCCGGAU-UGuucAGCGCUGg -3'
miRNA:   3'- aaCUACGgCGGCCUGuACu--UCGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.