miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1887 3' -47.2 NC_001347.2 + 190752 0.66 0.999987
Target:  5'- gCCguugCGCUGGGCCAUggGcGCCGGAc- -3'
miRNA:   3'- -GGa---GCGAUUUGGUGaaCcUGGUUUaa -5'
1887 3' -47.2 NC_001347.2 + 68928 0.66 0.999984
Target:  5'- cCCUCGUUGGAgagacgcgugccgcgUCGCUUGG-CCAGu-- -3'
miRNA:   3'- -GGAGCGAUUU---------------GGUGAACCuGGUUuaa -5'
1887 3' -47.2 NC_001347.2 + 46298 0.66 0.999982
Target:  5'- gCUCGC--GAUC-CUUGGGCCAu--- -3'
miRNA:   3'- gGAGCGauUUGGuGAACCUGGUuuaa -5'
1887 3' -47.2 NC_001347.2 + 2687 0.66 0.999982
Target:  5'- cCCUCGCagaaccuaaaaAGACCAaaaaaaaauCUUGGACCAcAGUUg -3'
miRNA:   3'- -GGAGCGa----------UUUGGU---------GAACCUGGU-UUAA- -5'
1887 3' -47.2 NC_001347.2 + 151979 0.66 0.999975
Target:  5'- cCCUCGCUGG------UGGACCAAAa- -3'
miRNA:   3'- -GGAGCGAUUuggugaACCUGGUUUaa -5'
1887 3' -47.2 NC_001347.2 + 203944 0.66 0.999966
Target:  5'- cCCUCGCUGGGCUACaa-GugCAGc-- -3'
miRNA:   3'- -GGAGCGAUUUGGUGaacCugGUUuaa -5'
1887 3' -47.2 NC_001347.2 + 76175 0.66 0.999955
Target:  5'- cUCUCGCUGAACCccccGC-UGGuGCCAc--- -3'
miRNA:   3'- -GGAGCGAUUUGG----UGaACC-UGGUuuaa -5'
1887 3' -47.2 NC_001347.2 + 119827 0.66 0.999955
Target:  5'- cCUUUGCgcuGCCGCU-GGACCGc--- -3'
miRNA:   3'- -GGAGCGauuUGGUGAaCCUGGUuuaa -5'
1887 3' -47.2 NC_001347.2 + 38818 0.67 0.999939
Target:  5'- gCCUUggGCgucACCACgUUGGACCAGu-- -3'
miRNA:   3'- -GGAG--CGauuUGGUG-AACCUGGUUuaa -5'
1887 3' -47.2 NC_001347.2 + 38932 0.67 0.99992
Target:  5'- uCCUCGUcgUAAACCGCcaUGGACgAGc-- -3'
miRNA:   3'- -GGAGCG--AUUUGGUGa-ACCUGgUUuaa -5'
1887 3' -47.2 NC_001347.2 + 156088 0.68 0.999638
Target:  5'- gCCUCGCgagGAgacACCGC--GGACCGGGg- -3'
miRNA:   3'- -GGAGCGa--UU---UGGUGaaCCUGGUUUaa -5'
1887 3' -47.2 NC_001347.2 + 179927 0.68 0.999546
Target:  5'- gCUCGCaaagAAGCCGCaccguaUGGACCAu--- -3'
miRNA:   3'- gGAGCGa---UUUGGUGa-----ACCUGGUuuaa -5'
1887 3' -47.2 NC_001347.2 + 201635 0.68 0.999546
Target:  5'- --cCGCUAuGCUGCUauacaUGGACCAAGUc -3'
miRNA:   3'- ggaGCGAUuUGGUGA-----ACCUGGUUUAa -5'
1887 3' -47.2 NC_001347.2 + 68675 0.7 0.997762
Target:  5'- -gUCGCUGccaGACCGCUuccaccgccUGGACCAu--- -3'
miRNA:   3'- ggAGCGAU---UUGGUGA---------ACCUGGUuuaa -5'
1887 3' -47.2 NC_001347.2 + 49145 0.7 0.997334
Target:  5'- --gCGCUGGGCCACgaGGuGCCAGAa- -3'
miRNA:   3'- ggaGCGAUUUGGUGaaCC-UGGUUUaa -5'
1887 3' -47.2 NC_001347.2 + 31423 0.7 0.996841
Target:  5'- uUCUCGUUGAGCCGCUgcaGGuuuuGCCGAu-- -3'
miRNA:   3'- -GGAGCGAUUUGGUGAa--CC----UGGUUuaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.