miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1888 3' -52.1 NC_001347.2 + 167227 0.66 0.996116
Target:  5'- -cAUGGGUGGCgGAgGACUgccGGCGGGUGu -3'
miRNA:   3'- guUGUCUACUGgCU-CUGA---UCGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 87702 0.66 0.996116
Target:  5'- gCAGCGGGggcGGCgGGGGC-AGCGGGUu -3'
miRNA:   3'- -GUUGUCUa--CUGgCUCUGaUCGCUCGc -5'
1888 3' -52.1 NC_001347.2 + 230227 0.66 0.996055
Target:  5'- --cCGGGUGgguguguGCCGGGugUGucGCGGGCGu -3'
miRNA:   3'- guuGUCUAC-------UGGCUCugAU--CGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 77944 0.66 0.995477
Target:  5'- -uGCuGA-GACUGAGACUGGUG-GUGa -3'
miRNA:   3'- guUGuCUaCUGGCUCUGAUCGCuCGC- -5'
1888 3' -52.1 NC_001347.2 + 14654 0.66 0.995409
Target:  5'- aCGACAGAUgGAUUGcgguacgcgaaacAGGCUGGCGAaaaGCGu -3'
miRNA:   3'- -GUUGUCUA-CUGGC-------------UCUGAUCGCU---CGC- -5'
1888 3' -52.1 NC_001347.2 + 228320 0.66 0.995055
Target:  5'- gCGACGGGgacggcGGCgGGGACgacgucccgccagcGGCGAGCGg -3'
miRNA:   3'- -GUUGUCUa-----CUGgCUCUGa-------------UCGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 655 0.66 0.994756
Target:  5'- --cCGGGUGugucguGCCGGGugUGucGCGGGCGu -3'
miRNA:   3'- guuGUCUAC------UGGCUCugAU--CGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 230134 0.66 0.994756
Target:  5'- --cCGGGUGugucguGCCGGGugUGucGCGGGCGu -3'
miRNA:   3'- guuGUCUAC------UGGCUCugAU--CGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 140765 0.66 0.994756
Target:  5'- aAACAGGUGcgcgaCGAGGCcggccaGGCGGGCa -3'
miRNA:   3'- gUUGUCUACug---GCUCUGa-----UCGCUCGc -5'
1888 3' -52.1 NC_001347.2 + 164426 0.66 0.993944
Target:  5'- cCAGCGGcUGGCCuucGGcacGCUGGCGGGCc -3'
miRNA:   3'- -GUUGUCuACUGGc--UC---UGAUCGCUCGc -5'
1888 3' -52.1 NC_001347.2 + 68049 0.66 0.993944
Target:  5'- uGACGGAgcUGcucCCGGGAucCUGGCGcAGCGa -3'
miRNA:   3'- gUUGUCU--ACu--GGCUCU--GAUCGC-UCGC- -5'
1888 3' -52.1 NC_001347.2 + 7797 0.66 0.993682
Target:  5'- aCGACGGA-GACCGGGACggugaugaggaaacUGGagaGAGCc -3'
miRNA:   3'- -GUUGUCUaCUGGCUCUG--------------AUCg--CUCGc -5'
1888 3' -52.1 NC_001347.2 + 9082 0.66 0.993034
Target:  5'- -cGCAGGUGGCaCGguAG-UUGGCGAGCu -3'
miRNA:   3'- guUGUCUACUG-GC--UCuGAUCGCUCGc -5'
1888 3' -52.1 NC_001347.2 + 37363 0.67 0.992018
Target:  5'- --cCGGGUGcCCGAGAC-GGgGGGCa -3'
miRNA:   3'- guuGUCUACuGGCUCUGaUCgCUCGc -5'
1888 3' -52.1 NC_001347.2 + 97830 0.67 0.991691
Target:  5'- --uCAGcgGACCcaguguuccuuggaGAGACgaaaAGCGAGCGu -3'
miRNA:   3'- guuGUCuaCUGG--------------CUCUGa---UCGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 193600 0.67 0.989635
Target:  5'- cCGGCGGGUGgccugagcacGCCGAGGCccagUGGCG-GCa -3'
miRNA:   3'- -GUUGUCUAC----------UGGCUCUG----AUCGCuCGc -5'
1888 3' -52.1 NC_001347.2 + 129044 0.67 0.98673
Target:  5'- -uGCAGGUG-CCGcGugUGGCcAGCGg -3'
miRNA:   3'- guUGUCUACuGGCuCugAUCGcUCGC- -5'
1888 3' -52.1 NC_001347.2 + 144812 0.67 0.98673
Target:  5'- aCAGCAGAUcGGCCaGGuACUcGCGcAGCGg -3'
miRNA:   3'- -GUUGUCUA-CUGGcUC-UGAuCGC-UCGC- -5'
1888 3' -52.1 NC_001347.2 + 186056 0.68 0.985061
Target:  5'- aGACAGAagagaagGACCGGGGCUuGGCGAc-- -3'
miRNA:   3'- gUUGUCUa------CUGGCUCUGA-UCGCUcgc -5'
1888 3' -52.1 NC_001347.2 + 152102 0.68 0.983236
Target:  5'- gAGCAGcacGACCGGGGC-AGCGAcGCc -3'
miRNA:   3'- gUUGUCua-CUGGCUCUGaUCGCU-CGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.