miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1888 3' -52.1 NC_001347.2 + 208858 0.76 0.69981
Target:  5'- -cACcGGUGGCCGAG-CUAuGCGAGCGg -3'
miRNA:   3'- guUGuCUACUGGCUCuGAU-CGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 221011 0.75 0.764408
Target:  5'- aCAGCAGcgGAUUGAGACaacagugacaaaaGGCGAGCGa -3'
miRNA:   3'- -GUUGUCuaCUGGCUCUGa------------UCGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 30996 0.75 0.786771
Target:  5'- aGACGGGgucGA-CGAGGCUGGUGAGCGc -3'
miRNA:   3'- gUUGUCUa--CUgGCUCUGAUCGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 751 0.73 0.861814
Target:  5'- gCGGCGGGUGgguguguGCCGGGugUGucGCGGGCGu -3'
miRNA:   3'- -GUUGUCUAC-------UGGCUCugAU--CGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 152422 0.7 0.954784
Target:  5'- -uGCAGGUGGCCGAGcGCcugGGCGccguGCGc -3'
miRNA:   3'- guUGUCUACUGGCUC-UGa--UCGCu---CGC- -5'
1888 3' -52.1 NC_001347.2 + 1975 0.7 0.960012
Target:  5'- gGACAGGaaaaagcgugugaucUGACCGAGGCgaagcauGUGGGUGg -3'
miRNA:   3'- gUUGUCU---------------ACUGGCUCUGau-----CGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 94480 0.69 0.962119
Target:  5'- gCGGCGGGUgGACCGGGA--AGCcGGCGg -3'
miRNA:   3'- -GUUGUCUA-CUGGCUCUgaUCGcUCGC- -5'
1888 3' -52.1 NC_001347.2 + 114300 0.69 0.971504
Target:  5'- gCGACAGA-GGCUGAGAUUua-GAGCGc -3'
miRNA:   3'- -GUUGUCUaCUGGCUCUGAucgCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 70434 0.68 0.978862
Target:  5'- gAGCAGuUGACUGAGAUUGagaucccGgGAGCGu -3'
miRNA:   3'- gUUGUCuACUGGCUCUGAU-------CgCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 152102 0.68 0.983236
Target:  5'- gAGCAGcacGACCGGGGC-AGCGAcGCc -3'
miRNA:   3'- gUUGUCua-CUGGCUCUGaUCGCU-CGc -5'
1888 3' -52.1 NC_001347.2 + 186056 0.68 0.985061
Target:  5'- aGACAGAagagaagGACCGGGGCUuGGCGAc-- -3'
miRNA:   3'- gUUGUCUa------CUGGCUCUGA-UCGCUcgc -5'
1888 3' -52.1 NC_001347.2 + 144812 0.67 0.98673
Target:  5'- aCAGCAGAUcGGCCaGGuACUcGCGcAGCGg -3'
miRNA:   3'- -GUUGUCUA-CUGGcUC-UGAuCGC-UCGC- -5'
1888 3' -52.1 NC_001347.2 + 129044 0.67 0.98673
Target:  5'- -uGCAGGUG-CCGcGugUGGCcAGCGg -3'
miRNA:   3'- guUGUCUACuGGCuCugAUCGcUCGC- -5'
1888 3' -52.1 NC_001347.2 + 193600 0.67 0.989635
Target:  5'- cCGGCGGGUGgccugagcacGCCGAGGCccagUGGCG-GCa -3'
miRNA:   3'- -GUUGUCUAC----------UGGCUCUG----AUCGCuCGc -5'
1888 3' -52.1 NC_001347.2 + 97830 0.67 0.991691
Target:  5'- --uCAGcgGACCcaguguuccuuggaGAGACgaaaAGCGAGCGu -3'
miRNA:   3'- guuGUCuaCUGG--------------CUCUGa---UCGCUCGC- -5'
1888 3' -52.1 NC_001347.2 + 37363 0.67 0.992018
Target:  5'- --cCGGGUGcCCGAGAC-GGgGGGCa -3'
miRNA:   3'- guuGUCUACuGGCUCUGaUCgCUCGc -5'
1888 3' -52.1 NC_001347.2 + 9082 0.66 0.993034
Target:  5'- -cGCAGGUGGCaCGguAG-UUGGCGAGCu -3'
miRNA:   3'- guUGUCUACUG-GC--UCuGAUCGCUCGc -5'
1888 3' -52.1 NC_001347.2 + 7797 0.66 0.993682
Target:  5'- aCGACGGA-GACCGGGACggugaugaggaaacUGGagaGAGCc -3'
miRNA:   3'- -GUUGUCUaCUGGCUCUG--------------AUCg--CUCGc -5'
1888 3' -52.1 NC_001347.2 + 68049 0.66 0.993944
Target:  5'- uGACGGAgcUGcucCCGGGAucCUGGCGcAGCGa -3'
miRNA:   3'- gUUGUCU--ACu--GGCUCU--GAUCGC-UCGC- -5'
1888 3' -52.1 NC_001347.2 + 164426 0.66 0.993944
Target:  5'- cCAGCGGcUGGCCuucGGcacGCUGGCGGGCc -3'
miRNA:   3'- -GUUGUCuACUGGc--UC---UGAUCGCUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.