miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18889 5' -56.8 NC_004683.1 + 18268 0.66 0.61384
Target:  5'- gUGCCCGGcgugcAGAcacagCGCGUCguGCUGCa -3'
miRNA:   3'- gACGGGCU-----UCUaga--GCGCAG--CGACGa -5'
18889 5' -56.8 NC_004683.1 + 52463 0.67 0.545843
Target:  5'- gUGCCgCGcgacaucaccacgcAGGGUCUCGCG-CGCUGgCUc -3'
miRNA:   3'- gACGG-GC--------------UUCUAGAGCGCaGCGAC-GA- -5'
18889 5' -56.8 NC_004683.1 + 9969 0.67 0.538417
Target:  5'- gCUGCCUGAAGcg-UCGaGUCGaCUGCUg -3'
miRNA:   3'- -GACGGGCUUCuagAGCgCAGC-GACGA- -5'
18889 5' -56.8 NC_004683.1 + 12594 0.68 0.50701
Target:  5'- -gGCUCGgcGAUCUCGCcGUCGaUGUa -3'
miRNA:   3'- gaCGGGCuuCUAGAGCG-CAGCgACGa -5'
18889 5' -56.8 NC_004683.1 + 43641 0.68 0.50701
Target:  5'- --aCCCGAGacGAUCUCGCaagUGCUGCa -3'
miRNA:   3'- gacGGGCUU--CUAGAGCGca-GCGACGa -5'
18889 5' -56.8 NC_004683.1 + 33325 0.68 0.505976
Target:  5'- cCUGgCCGcGGAUCUgggcgagCGCGUCGCggGCc -3'
miRNA:   3'- -GACgGGCuUCUAGA-------GCGCAGCGa-CGa -5'
18889 5' -56.8 NC_004683.1 + 37500 0.68 0.486511
Target:  5'- -cGCCUGcGGGAUCUucUGUGUCGcCUGCa -3'
miRNA:   3'- gaCGGGC-UUCUAGA--GCGCAGC-GACGa -5'
18889 5' -56.8 NC_004683.1 + 12678 0.69 0.466414
Target:  5'- gUGCCCGGGcGAUCgucggCGCGgaUCGCcGCg -3'
miRNA:   3'- gACGGGCUU-CUAGa----GCGC--AGCGaCGa -5'
18889 5' -56.8 NC_004683.1 + 1678 0.69 0.446754
Target:  5'- -gGCCuCGAcGAUCgcagCGCGgccggcgCGCUGCUg -3'
miRNA:   3'- gaCGG-GCUuCUAGa---GCGCa------GCGACGA- -5'
18889 5' -56.8 NC_004683.1 + 39068 0.72 0.323469
Target:  5'- uUGCCCGAAGcgCUgCGUcUCGCgGCUg -3'
miRNA:   3'- gACGGGCUUCuaGA-GCGcAGCGaCGA- -5'
18889 5' -56.8 NC_004683.1 + 19507 1.08 0.000867
Target:  5'- uCUGCCCGAAGAUCUCGCGUCGCUGCUg -3'
miRNA:   3'- -GACGGGCUUCUAGAGCGCAGCGACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.