miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18891 5' -51.4 NC_004683.1 + 51854 0.66 0.911776
Target:  5'- gGCcGACAGCGCCcggGCAcGCAgCUCGcCc -3'
miRNA:   3'- -CGcUUGUCGUGG---UGUaUGUgGAGCaG- -5'
18891 5' -51.4 NC_004683.1 + 3463 0.66 0.905055
Target:  5'- cGCGAGCcggaucaacGCACCAgcgauUGUGCGCCUCa-- -3'
miRNA:   3'- -CGCUUGu--------CGUGGU-----GUAUGUGGAGcag -5'
18891 5' -51.4 NC_004683.1 + 8870 0.66 0.905055
Target:  5'- gGCGAACaccuuGGCuauguaCGCGUcggGCACCUgGUCg -3'
miRNA:   3'- -CGCUUG-----UCGug----GUGUA---UGUGGAgCAG- -5'
18891 5' -51.4 NC_004683.1 + 23966 0.66 0.898049
Target:  5'- uCGAGCAcgGCUACGUGCcCCUCGg- -3'
miRNA:   3'- cGCUUGUcgUGGUGUAUGuGGAGCag -5'
18891 5' -51.4 NC_004683.1 + 38626 0.66 0.898049
Target:  5'- cGCGGccucacCGGCuGCCACAUACAgCgUGUCa -3'
miRNA:   3'- -CGCUu-----GUCG-UGGUGUAUGUgGaGCAG- -5'
18891 5' -51.4 NC_004683.1 + 34634 0.66 0.898049
Target:  5'- cCGAACccGGCAgCGCGUcCACCUCuUCc -3'
miRNA:   3'- cGCUUG--UCGUgGUGUAuGUGGAGcAG- -5'
18891 5' -51.4 NC_004683.1 + 4035 0.66 0.890761
Target:  5'- cGCGAguugguACcGgGCCACGUuCGCCUCGa- -3'
miRNA:   3'- -CGCU------UGuCgUGGUGUAuGUGGAGCag -5'
18891 5' -51.4 NC_004683.1 + 41170 0.66 0.890761
Target:  5'- cGCGGucACAGCGgcccuCCACAgucaugGCACUUUGUg -3'
miRNA:   3'- -CGCU--UGUCGU-----GGUGUa-----UGUGGAGCAg -5'
18891 5' -51.4 NC_004683.1 + 43388 0.66 0.890761
Target:  5'- -gGGGCGGCGCCGCAacCGCCaggCGaUCc -3'
miRNA:   3'- cgCUUGUCGUGGUGUauGUGGa--GC-AG- -5'
18891 5' -51.4 NC_004683.1 + 26713 0.66 0.890761
Target:  5'- uGCGccGGCGGCAUCGC--GCACCgaccaccCGUCu -3'
miRNA:   3'- -CGC--UUGUCGUGGUGuaUGUGGa------GCAG- -5'
18891 5' -51.4 NC_004683.1 + 54113 0.66 0.883196
Target:  5'- cGCGAAguGCACgACAU---CCUCGg- -3'
miRNA:   3'- -CGCUUguCGUGgUGUAuguGGAGCag -5'
18891 5' -51.4 NC_004683.1 + 31492 0.66 0.883196
Target:  5'- gGCGAcggcCAGCGCCGCGguggcCACCaCGUa -3'
miRNA:   3'- -CGCUu---GUCGUGGUGUau---GUGGaGCAg -5'
18891 5' -51.4 NC_004683.1 + 47218 0.66 0.883196
Target:  5'- gGCGAAUccCGCUuugaggaacuugGCGUACACCUCGg- -3'
miRNA:   3'- -CGCUUGucGUGG------------UGUAUGUGGAGCag -5'
18891 5' -51.4 NC_004683.1 + 16838 0.66 0.883196
Target:  5'- uGUGAACuuCACCGaacCGUACGCgaUCGUCg -3'
miRNA:   3'- -CGCUUGucGUGGU---GUAUGUGg-AGCAG- -5'
18891 5' -51.4 NC_004683.1 + 7717 0.66 0.883196
Target:  5'- gGCGuguuCGGCccgaaaGCCugGUaugcGCACUUCGUCg -3'
miRNA:   3'- -CGCuu--GUCG------UGGugUA----UGUGGAGCAG- -5'
18891 5' -51.4 NC_004683.1 + 55217 0.66 0.883196
Target:  5'- --uGGCAGCACCAC-UACACCa-GUa -3'
miRNA:   3'- cgcUUGUCGUGGUGuAUGUGGagCAg -5'
18891 5' -51.4 NC_004683.1 + 28564 0.66 0.883196
Target:  5'- cGUGAGCGGaACCGCccGCGCCccggcugCGUCc -3'
miRNA:   3'- -CGCUUGUCgUGGUGuaUGUGGa------GCAG- -5'
18891 5' -51.4 NC_004683.1 + 52514 0.67 0.875361
Target:  5'- aGCGggUGG-AUCGC-UGCGCgUCGUCg -3'
miRNA:   3'- -CGCuuGUCgUGGUGuAUGUGgAGCAG- -5'
18891 5' -51.4 NC_004683.1 + 26175 0.67 0.875361
Target:  5'- cGCGAucaugaacCGGCGCCACAccaACGCgCUCGcCc -3'
miRNA:   3'- -CGCUu-------GUCGUGGUGUa--UGUG-GAGCaG- -5'
18891 5' -51.4 NC_004683.1 + 46338 0.67 0.875361
Target:  5'- uGCGGGCAGguCCGCGUgAUGCagUCGUg -3'
miRNA:   3'- -CGCUUGUCguGGUGUA-UGUGg-AGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.