Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18899 | 3' | -53.8 | NC_004683.1 | + | 1700 | 0.68 | 0.649675 |
Target: 5'- --cCGGCGcGCUGCUgCCugaccucaagAAGCUCGGCu -3' miRNA: 3'- gaaGUCGC-CGAUGA-GG----------UUCGAGCUGc -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 47853 | 0.69 | 0.59191 |
Target: 5'- gUUCGGCGGCggugccucgcuUUCCGAGCUUG-CGc -3' miRNA: 3'- gAAGUCGCCGau---------GAGGUUCGAGCuGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 28629 | 0.7 | 0.539374 |
Target: 5'- gUUUGGCGGCcgACggCCGAGaCUUGGCGg -3' miRNA: 3'- gAAGUCGCCGa-UGa-GGUUC-GAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 7491 | 0.71 | 0.517935 |
Target: 5'- --gCAGCGGC-GCaCCGGGCUUGAUGu -3' miRNA: 3'- gaaGUCGCCGaUGaGGUUCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 12568 | 0.71 | 0.496842 |
Target: 5'- aCUUCGGUGGCguaucgACcUCGugcGGCUCGGCGa -3' miRNA: 3'- -GAAGUCGCCGa-----UGaGGU---UCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 52183 | 0.71 | 0.486442 |
Target: 5'- -gUCcGUgGGCUugUCC-AGCUCGGCGa -3' miRNA: 3'- gaAGuCG-CCGAugAGGuUCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 5371 | 0.72 | 0.455886 |
Target: 5'- --aCGGCGGCUACcuggugccguUCC-AGCUCGAUc -3' miRNA: 3'- gaaGUCGCCGAUG----------AGGuUCGAGCUGc -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 44340 | 0.73 | 0.398066 |
Target: 5'- --gCAGCGGCgccGCggCCAGGCUggCGACGa -3' miRNA: 3'- gaaGUCGCCGa--UGa-GGUUCGA--GCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 13113 | 0.73 | 0.370974 |
Target: 5'- --gCGGCGGCUGC-CCGgaggGGCaUCGGCGg -3' miRNA: 3'- gaaGUCGCCGAUGaGGU----UCG-AGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 38477 | 0.74 | 0.362227 |
Target: 5'- gUUguGCaGCgACUCCAGGUUCGGCGu -3' miRNA: 3'- gAAguCGcCGaUGAGGUUCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 52098 | 0.74 | 0.353625 |
Target: 5'- gUUCGGCGGCgcGCUCCAGGCggcucaUGugGu -3' miRNA: 3'- gAAGUCGCCGa-UGAGGUUCGa-----GCugC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 2752 | 0.77 | 0.242129 |
Target: 5'- --gCGGCGGCcGCggCGAGCUCGGCGg -3' miRNA: 3'- gaaGUCGCCGaUGagGUUCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 5677 | 0.8 | 0.148591 |
Target: 5'- -aUCGGCGGCc-CUCC-AGCUCGGCGa -3' miRNA: 3'- gaAGUCGCCGauGAGGuUCGAGCUGC- -5' |
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18899 | 3' | -53.8 | NC_004683.1 | + | 23832 | 1.09 | 0.001394 |
Target: 5'- aCUUCAGCGGCUACUCCAAGCUCGACGu -3' miRNA: 3'- -GAAGUCGCCGAUGAGGUUCGAGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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