miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18899 5' -57.7 NC_004683.1 + 43175 0.66 0.609428
Target:  5'- gGGCUgcugcUGGCCCgGCUGACUGGGcugagccGGGUu -3'
miRNA:   3'- -CUGAa----GCCGGG-CGACUGGCUCu------UCCA- -5'
18899 5' -57.7 NC_004683.1 + 6006 0.66 0.609428
Target:  5'- cGGCgggugCGGCCggagCGCUGugCGcgacgGGAAGGUu -3'
miRNA:   3'- -CUGaa---GCCGG----GCGACugGC-----UCUUCCA- -5'
18899 5' -57.7 NC_004683.1 + 44863 0.66 0.587831
Target:  5'- uGGCc-CGGCCUGgaGGCCGAGugccgauacacgGAGGUu -3'
miRNA:   3'- -CUGaaGCCGGGCgaCUGGCUC------------UUCCA- -5'
18899 5' -57.7 NC_004683.1 + 48581 0.66 0.566378
Target:  5'- gGGCUggaucgCGGCCCGCgcggGGCCGAucaccgucaGGAGa- -3'
miRNA:   3'- -CUGAa-----GCCGGGCGa---CUGGCU---------CUUCca -5'
18899 5' -57.7 NC_004683.1 + 25762 0.67 0.545131
Target:  5'- uGCcgUCGaGCaCGCUGGCCGAGGAGu- -3'
miRNA:   3'- cUGa-AGC-CGgGCGACUGGCUCUUCca -5'
18899 5' -57.7 NC_004683.1 + 51959 0.67 0.534604
Target:  5'- cGCagUGGaUCCGCUGACgcgccuCGAGAAGGUg -3'
miRNA:   3'- cUGaaGCC-GGGCGACUG------GCUCUUCCA- -5'
18899 5' -57.7 NC_004683.1 + 10499 0.67 0.534604
Target:  5'- uGCUgcgGGCCgGCUucgcGCCGAGGAGGa -3'
miRNA:   3'- cUGAag-CCGGgCGAc---UGGCUCUUCCa -5'
18899 5' -57.7 NC_004683.1 + 4735 0.67 0.534604
Target:  5'- uACUcgcaGGCCCGCaaccgGGCCGAcGAGGUc -3'
miRNA:   3'- cUGAag--CCGGGCGa----CUGGCUcUUCCA- -5'
18899 5' -57.7 NC_004683.1 + 12193 0.67 0.524149
Target:  5'- gGGCacgCGGCCCGCcGccGCCGGGucguAGGUu -3'
miRNA:   3'- -CUGaa-GCCGGGCGaC--UGGCUCu---UCCA- -5'
18899 5' -57.7 NC_004683.1 + 39138 0.68 0.453485
Target:  5'- uGCUcgaGGCCCGC--AUCGAGAAGGa -3'
miRNA:   3'- cUGAag-CCGGGCGacUGGCUCUUCCa -5'
18899 5' -57.7 NC_004683.1 + 17767 0.69 0.40631
Target:  5'- cGACccgGGCCCGUgGACCGAGAuccucgaagAGGUc -3'
miRNA:   3'- -CUGaagCCGGGCGaCUGGCUCU---------UCCA- -5'
18899 5' -57.7 NC_004683.1 + 41415 0.7 0.337589
Target:  5'- uGGCUggugUGGCCCuugcGCUGAUCGAcGAAGGc -3'
miRNA:   3'- -CUGAa---GCCGGG----CGACUGGCU-CUUCCa -5'
18899 5' -57.7 NC_004683.1 + 23866 1.07 0.000869
Target:  5'- cGACUUCGGCCCGCUGACCGAGAAGGUc -3'
miRNA:   3'- -CUGAAGCCGGGCGACUGGCUCUUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.