Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18899 | 5' | -57.7 | NC_004683.1 | + | 51959 | 0.67 | 0.534604 |
Target: 5'- cGCagUGGaUCCGCUGACgcgccuCGAGAAGGUg -3' miRNA: 3'- cUGaaGCC-GGGCGACUG------GCUCUUCCA- -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 48581 | 0.66 | 0.566378 |
Target: 5'- gGGCUggaucgCGGCCCGCgcggGGCCGAucaccgucaGGAGa- -3' miRNA: 3'- -CUGAa-----GCCGGGCGa---CUGGCU---------CUUCca -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 44863 | 0.66 | 0.587831 |
Target: 5'- uGGCc-CGGCCUGgaGGCCGAGugccgauacacgGAGGUu -3' miRNA: 3'- -CUGaaGCCGGGCgaCUGGCUC------------UUCCA- -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 43175 | 0.66 | 0.609428 |
Target: 5'- gGGCUgcugcUGGCCCgGCUGACUGGGcugagccGGGUu -3' miRNA: 3'- -CUGAa----GCCGGG-CGACUGGCUCu------UCCA- -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 41415 | 0.7 | 0.337589 |
Target: 5'- uGGCUggugUGGCCCuugcGCUGAUCGAcGAAGGc -3' miRNA: 3'- -CUGAa---GCCGGG----CGACUGGCU-CUUCCa -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 39138 | 0.68 | 0.453485 |
Target: 5'- uGCUcgaGGCCCGC--AUCGAGAAGGa -3' miRNA: 3'- cUGAag-CCGGGCGacUGGCUCUUCCa -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 25762 | 0.67 | 0.545131 |
Target: 5'- uGCcgUCGaGCaCGCUGGCCGAGGAGu- -3' miRNA: 3'- cUGa-AGC-CGgGCGACUGGCUCUUCca -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 23866 | 1.07 | 0.000869 |
Target: 5'- cGACUUCGGCCCGCUGACCGAGAAGGUc -3' miRNA: 3'- -CUGAAGCCGGGCGACUGGCUCUUCCA- -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 17767 | 0.69 | 0.40631 |
Target: 5'- cGACccgGGCCCGUgGACCGAGAuccucgaagAGGUc -3' miRNA: 3'- -CUGaagCCGGGCGaCUGGCUCU---------UCCA- -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 12193 | 0.67 | 0.524149 |
Target: 5'- gGGCacgCGGCCCGCcGccGCCGGGucguAGGUu -3' miRNA: 3'- -CUGaa-GCCGGGCGaC--UGGCUCu---UCCA- -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 10499 | 0.67 | 0.534604 |
Target: 5'- uGCUgcgGGCCgGCUucgcGCCGAGGAGGa -3' miRNA: 3'- cUGAag-CCGGgCGAc---UGGCUCUUCCa -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 6006 | 0.66 | 0.609428 |
Target: 5'- cGGCgggugCGGCCggagCGCUGugCGcgacgGGAAGGUu -3' miRNA: 3'- -CUGaa---GCCGG----GCGACugGC-----UCUUCCA- -5' |
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18899 | 5' | -57.7 | NC_004683.1 | + | 4735 | 0.67 | 0.534604 |
Target: 5'- uACUcgcaGGCCCGCaaccgGGCCGAcGAGGUc -3' miRNA: 3'- cUGAag--CCGGGCGa----CUGGCUcUUCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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