miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1890 3' -58.7 NC_001347.2 + 88033 0.66 0.884544
Target:  5'- gAugGCuGCGAGgcGCUGGCCgCGuCGCUGAu -3'
miRNA:   3'- -UugUG-UGCUC--UGGCUGGgGC-GCGACU- -5'
1890 3' -58.7 NC_001347.2 + 211366 0.66 0.877794
Target:  5'- cAGCGCAUGGGGCCGcacggaccuacuGCCCacgggCGCGCg-- -3'
miRNA:   3'- -UUGUGUGCUCUGGC------------UGGG-----GCGCGacu -5'
1890 3' -58.7 NC_001347.2 + 90368 0.66 0.877794
Target:  5'- cAC-CGCGAu-CUGAUCCgCGCGCUGAc -3'
miRNA:   3'- uUGuGUGCUcuGGCUGGG-GCGCGACU- -5'
1890 3' -58.7 NC_001347.2 + 151653 0.66 0.853366
Target:  5'- cGCGCGCGAcGCCGAacucuaccaccugCCCGUGUUGGa -3'
miRNA:   3'- uUGUGUGCUcUGGCUg------------GGGCGCGACU- -5'
1890 3' -58.7 NC_001347.2 + 36167 0.67 0.848828
Target:  5'- ---gUACGAGGCCaAUCCCGaGCUGAg -3'
miRNA:   3'- uuguGUGCUCUGGcUGGGGCgCGACU- -5'
1890 3' -58.7 NC_001347.2 + 79344 0.67 0.848828
Target:  5'- cAUGCGCGAGugUcaaGACCCUGUGCg-- -3'
miRNA:   3'- uUGUGUGCUCugG---CUGGGGCGCGacu -5'
1890 3' -58.7 NC_001347.2 + 121971 0.67 0.833239
Target:  5'- -cCGCACGAGACgCGACUCC-UGCaGAc -3'
miRNA:   3'- uuGUGUGCUCUG-GCUGGGGcGCGaCU- -5'
1890 3' -58.7 NC_001347.2 + 71304 0.67 0.82519
Target:  5'- uGCGCAUGGuaGCCGugucgcgcACCCgGCGCUGAc -3'
miRNA:   3'- uUGUGUGCUc-UGGC--------UGGGgCGCGACU- -5'
1890 3' -58.7 NC_001347.2 + 165255 0.67 0.816978
Target:  5'- -uUACGCcgGAGGCCGccaACUCCGUGCUGu -3'
miRNA:   3'- uuGUGUG--CUCUGGC---UGGGGCGCGACu -5'
1890 3' -58.7 NC_001347.2 + 164408 0.67 0.808613
Target:  5'- cACGCugGcGGGCCGACCgCCGcCGCc-- -3'
miRNA:   3'- uUGUGugC-UCUGGCUGG-GGC-GCGacu -5'
1890 3' -58.7 NC_001347.2 + 72543 0.68 0.791449
Target:  5'- uACGCGCcaAGcgcuUCGACgCCCGCGCUGAu -3'
miRNA:   3'- uUGUGUGc-UCu---GGCUG-GGGCGCGACU- -5'
1890 3' -58.7 NC_001347.2 + 155532 0.68 0.791449
Target:  5'- uGCACACGugcAGACUcuuGCCCUGCGCcGAc -3'
miRNA:   3'- uUGUGUGC---UCUGGc--UGGGGCGCGaCU- -5'
1890 3' -58.7 NC_001347.2 + 37063 0.68 0.791449
Target:  5'- cACGCGCGAcuuGGCCGACCUgugCGUGCg-- -3'
miRNA:   3'- uUGUGUGCU---CUGGCUGGG---GCGCGacu -5'
1890 3' -58.7 NC_001347.2 + 228810 0.68 0.755599
Target:  5'- cGCGCAgGAcgGACUGuACCUgGCGCUGGg -3'
miRNA:   3'- uUGUGUgCU--CUGGC-UGGGgCGCGACU- -5'
1890 3' -58.7 NC_001347.2 + 140758 0.68 0.755599
Target:  5'- uGCGCgACGAGGCCGgccaggcgggcACCUCGCGCc-- -3'
miRNA:   3'- uUGUG-UGCUCUGGC-----------UGGGGCGCGacu -5'
1890 3' -58.7 NC_001347.2 + 228877 0.69 0.737041
Target:  5'- --uGCACGAGGUgGACCCCGCaGCcGAc -3'
miRNA:   3'- uugUGUGCUCUGgCUGGGGCG-CGaCU- -5'
1890 3' -58.7 NC_001347.2 + 95097 0.69 0.736104
Target:  5'- -cCACAgccugguggggucCGAGgcGCCGACCCCG-GCUGGg -3'
miRNA:   3'- uuGUGU-------------GCUC--UGGCUGGGGCgCGACU- -5'
1890 3' -58.7 NC_001347.2 + 201133 0.69 0.708595
Target:  5'- --gACugGAGGCUcugugGACCCUGCGCggGAa -3'
miRNA:   3'- uugUGugCUCUGG-----CUGGGGCGCGa-CU- -5'
1890 3' -58.7 NC_001347.2 + 205699 0.71 0.630691
Target:  5'- cGCucaGCGAaACCGGCaCCCGCGCUGc -3'
miRNA:   3'- uUGug-UGCUcUGGCUG-GGGCGCGACu -5'
1890 3' -58.7 NC_001347.2 + 167529 0.72 0.562411
Target:  5'- cGACGaGCGGcGGCCGACCCCGcCGUUGc -3'
miRNA:   3'- -UUGUgUGCU-CUGGCUGGGGC-GCGACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.