Results 1 - 20 of 22 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1890 | 3' | -58.7 | NC_001347.2 | + | 88033 | 0.66 | 0.884544 |
Target: 5'- gAugGCuGCGAGgcGCUGGCCgCGuCGCUGAu -3' miRNA: 3'- -UugUG-UGCUC--UGGCUGGgGC-GCGACU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 211366 | 0.66 | 0.877794 |
Target: 5'- cAGCGCAUGGGGCCGcacggaccuacuGCCCacgggCGCGCg-- -3' miRNA: 3'- -UUGUGUGCUCUGGC------------UGGG-----GCGCGacu -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 90368 | 0.66 | 0.877794 |
Target: 5'- cAC-CGCGAu-CUGAUCCgCGCGCUGAc -3' miRNA: 3'- uUGuGUGCUcuGGCUGGG-GCGCGACU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 151653 | 0.66 | 0.853366 |
Target: 5'- cGCGCGCGAcGCCGAacucuaccaccugCCCGUGUUGGa -3' miRNA: 3'- uUGUGUGCUcUGGCUg------------GGGCGCGACU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 164408 | 0.67 | 0.808613 |
Target: 5'- cACGCugGcGGGCCGACCgCCGcCGCc-- -3' miRNA: 3'- uUGUGugC-UCUGGCUGG-GGC-GCGacu -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 165255 | 0.67 | 0.816978 |
Target: 5'- -uUACGCcgGAGGCCGccaACUCCGUGCUGu -3' miRNA: 3'- uuGUGUG--CUCUGGC---UGGGGCGCGACu -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 121971 | 0.67 | 0.833239 |
Target: 5'- -cCGCACGAGACgCGACUCC-UGCaGAc -3' miRNA: 3'- uuGUGUGCUCUG-GCUGGGGcGCGaCU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 71304 | 0.67 | 0.82519 |
Target: 5'- uGCGCAUGGuaGCCGugucgcgcACCCgGCGCUGAc -3' miRNA: 3'- uUGUGUGCUc-UGGC--------UGGGgCGCGACU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 79344 | 0.67 | 0.848828 |
Target: 5'- cAUGCGCGAGugUcaaGACCCUGUGCg-- -3' miRNA: 3'- uUGUGUGCUCugG---CUGGGGCGCGacu -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 36167 | 0.67 | 0.848828 |
Target: 5'- ---gUACGAGGCCaAUCCCGaGCUGAg -3' miRNA: 3'- uuguGUGCUCUGGcUGGGGCgCGACU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 140758 | 0.68 | 0.755599 |
Target: 5'- uGCGCgACGAGGCCGgccaggcgggcACCUCGCGCc-- -3' miRNA: 3'- uUGUG-UGCUCUGGC-----------UGGGGCGCGacu -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 72543 | 0.68 | 0.791449 |
Target: 5'- uACGCGCcaAGcgcuUCGACgCCCGCGCUGAu -3' miRNA: 3'- uUGUGUGc-UCu---GGCUG-GGGCGCGACU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 155532 | 0.68 | 0.791449 |
Target: 5'- uGCACACGugcAGACUcuuGCCCUGCGCcGAc -3' miRNA: 3'- uUGUGUGC---UCUGGc--UGGGGCGCGaCU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 228810 | 0.68 | 0.755599 |
Target: 5'- cGCGCAgGAcgGACUGuACCUgGCGCUGGg -3' miRNA: 3'- uUGUGUgCU--CUGGC-UGGGgCGCGACU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 37063 | 0.68 | 0.791449 |
Target: 5'- cACGCGCGAcuuGGCCGACCUgugCGUGCg-- -3' miRNA: 3'- uUGUGUGCU---CUGGCUGGG---GCGCGacu -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 228877 | 0.69 | 0.737041 |
Target: 5'- --uGCACGAGGUgGACCCCGCaGCcGAc -3' miRNA: 3'- uugUGUGCUCUGgCUGGGGCG-CGaCU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 95097 | 0.69 | 0.736104 |
Target: 5'- -cCACAgccugguggggucCGAGgcGCCGACCCCG-GCUGGg -3' miRNA: 3'- uuGUGU-------------GCUC--UGGCUGGGGCgCGACU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 201133 | 0.69 | 0.708595 |
Target: 5'- --gACugGAGGCUcugugGACCCUGCGCggGAa -3' miRNA: 3'- uugUGugCUCUGG-----CUGGGGCGCGa-CU- -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 205699 | 0.71 | 0.630691 |
Target: 5'- cGCucaGCGAaACCGGCaCCCGCGCUGc -3' miRNA: 3'- uUGug-UGCUcUGGCUG-GGGCGCGACu -5' |
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1890 | 3' | -58.7 | NC_001347.2 | + | 167529 | 0.72 | 0.562411 |
Target: 5'- cGACGaGCGGcGGCCGACCCCGcCGUUGc -3' miRNA: 3'- -UUGUgUGCU-CUGGCUGGGGC-GCGACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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