miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1890 5' -56.7 NC_001347.2 + 228421 0.66 0.945822
Target:  5'- uGACgGCCgUGCGUcggcaccugaaccagCGUCUGUGCUgcgGCu -3'
miRNA:   3'- -CUGgCGG-ACGCA---------------GCGGAUACGAag-CG- -5'
1890 5' -56.7 NC_001347.2 + 151559 0.66 0.944096
Target:  5'- aACCGCCUG-GUgGCCaacaGCUucuucUCGCa -3'
miRNA:   3'- cUGGCGGACgCAgCGGaua-CGA-----AGCG- -5'
1890 5' -56.7 NC_001347.2 + 135970 0.66 0.942335
Target:  5'- cGCCGCCcacggcguccucgGCGUCGUCggaggccgGUGCgUCGUc -3'
miRNA:   3'- cUGGCGGa------------CGCAGCGGa-------UACGaAGCG- -5'
1890 5' -56.7 NC_001347.2 + 86579 0.66 0.939627
Target:  5'- ---aGCuCUcCGUCGCCUAUGCggcaucUCGCc -3'
miRNA:   3'- cuggCG-GAcGCAGCGGAUACGa-----AGCG- -5'
1890 5' -56.7 NC_001347.2 + 48547 0.66 0.93201
Target:  5'- cGACCG-CUGCGUgCGCCgacggcguuucaaggUGUGCgacgUCGg -3'
miRNA:   3'- -CUGGCgGACGCA-GCGG---------------AUACGa---AGCg -5'
1890 5' -56.7 NC_001347.2 + 64151 0.66 0.930015
Target:  5'- cGGCCGCCgccGCaaCGCCcGUGCc-CGCg -3'
miRNA:   3'- -CUGGCGGa--CGcaGCGGaUACGaaGCG- -5'
1890 5' -56.7 NC_001347.2 + 191843 0.66 0.924872
Target:  5'- cGCCGCCgucccCGUCGCCggccccGCcgCGCa -3'
miRNA:   3'- cUGGCGGac---GCAGCGGaua---CGaaGCG- -5'
1890 5' -56.7 NC_001347.2 + 192053 0.67 0.919502
Target:  5'- cACCGUCgGCGcCGCUgcUGCUgcCGCg -3'
miRNA:   3'- cUGGCGGaCGCaGCGGauACGAa-GCG- -5'
1890 5' -56.7 NC_001347.2 + 144947 0.67 0.913908
Target:  5'- cGCCGCCaGCGccgUCGCCcgcgGCUaggccgagacUCGCg -3'
miRNA:   3'- cUGGCGGaCGC---AGCGGaua-CGA----------AGCG- -5'
1890 5' -56.7 NC_001347.2 + 189676 0.67 0.908089
Target:  5'- uGGCCGCCgGCGaUGCCgggGUGU--UGCg -3'
miRNA:   3'- -CUGGCGGaCGCaGCGGa--UACGaaGCG- -5'
1890 5' -56.7 NC_001347.2 + 198581 0.67 0.908089
Target:  5'- gGGCCGUCUGCa-CGCCccggaGUGCcUCGUg -3'
miRNA:   3'- -CUGGCGGACGcaGCGGa----UACGaAGCG- -5'
1890 5' -56.7 NC_001347.2 + 209025 0.67 0.88931
Target:  5'- aGCCGCgCU-UGUCGCC-AUGCUUCa- -3'
miRNA:   3'- cUGGCG-GAcGCAGCGGaUACGAAGcg -5'
1890 5' -56.7 NC_001347.2 + 144632 0.68 0.882618
Target:  5'- cGGCCGCC-GCGUCguGCCUccGCa--GCa -3'
miRNA:   3'- -CUGGCGGaCGCAG--CGGAuaCGaagCG- -5'
1890 5' -56.7 NC_001347.2 + 75152 0.68 0.882618
Target:  5'- cGGCCGCC-GCGgcgGCCagcGCUUCGUc -3'
miRNA:   3'- -CUGGCGGaCGCag-CGGauaCGAAGCG- -5'
1890 5' -56.7 NC_001347.2 + 228263 0.68 0.882618
Target:  5'- aGGCCGCCgGCGgggacgCGCC-GUGCgcgauaGCg -3'
miRNA:   3'- -CUGGCGGaCGCa-----GCGGaUACGaag---CG- -5'
1890 5' -56.7 NC_001347.2 + 20125 0.68 0.88057
Target:  5'- cGCCGCaCUGCGUucucacucgcgucgUGCCUgacgGUGCUUucUGCa -3'
miRNA:   3'- cUGGCG-GACGCA--------------GCGGA----UACGAA--GCG- -5'
1890 5' -56.7 NC_001347.2 + 71590 0.68 0.875717
Target:  5'- aGACCGCCUGCcacGUCggcgGCCacauUGUGCagcaggCGCg -3'
miRNA:   3'- -CUGGCGGACG---CAG----CGG----AUACGaa----GCG- -5'
1890 5' -56.7 NC_001347.2 + 28813 0.68 0.858324
Target:  5'- aGACCGCUgccucguuauccgGCGUCGCUggcGCUUgGUg -3'
miRNA:   3'- -CUGGCGGa------------CGCAGCGGauaCGAAgCG- -5'
1890 5' -56.7 NC_001347.2 + 55470 0.68 0.8538
Target:  5'- cGACCugcugGCCuUGUGgCGCCUGUGCaugaagCGCg -3'
miRNA:   3'- -CUGG-----CGG-ACGCaGCGGAUACGaa----GCG- -5'
1890 5' -56.7 NC_001347.2 + 162426 0.68 0.846108
Target:  5'- cGCCGCCUGC-UCGCUcGUGCgcuaCGg -3'
miRNA:   3'- cUGGCGGACGcAGCGGaUACGaa--GCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.