miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18902 3' -59.8 NC_004683.1 + 43319 0.66 0.468804
Target:  5'- uGGCGaGCCCGACGGCAGGaaUGUcuccaUGAGa -3'
miRNA:   3'- -UCGUcCGGGUUGUCGUCC--ACGc----GCUC- -5'
18902 3' -59.8 NC_004683.1 + 18263 0.66 0.449255
Target:  5'- aGGCGGuGCCCGGCGuGCAGacacaGCGCGu- -3'
miRNA:   3'- -UCGUC-CGGGUUGU-CGUCca---CGCGCuc -5'
18902 3' -59.8 NC_004683.1 + 24701 0.66 0.448289
Target:  5'- aAGgGGGCCUGACcuggguGGCAGGUGCaggauucgaaccuGCGuAGg -3'
miRNA:   3'- -UCgUCCGGGUUG------UCGUCCACG-------------CGC-UC- -5'
18902 3' -59.8 NC_004683.1 + 40809 0.66 0.43965
Target:  5'- cGGCgAGG-CCGAguGCgAGGUGCaCGAGg -3'
miRNA:   3'- -UCG-UCCgGGUUguCG-UCCACGcGCUC- -5'
18902 3' -59.8 NC_004683.1 + 4941 0.66 0.43965
Target:  5'- gAGCGGcGgCCAGCGGCGcaUGCGCGu- -3'
miRNA:   3'- -UCGUC-CgGGUUGUCGUccACGCGCuc -5'
18902 3' -59.8 NC_004683.1 + 664 0.66 0.439649
Target:  5'- cGUAGGCgaCGGCGuGCA-GUGUGCGGGg -3'
miRNA:   3'- uCGUCCGg-GUUGU-CGUcCACGCGCUC- -5'
18902 3' -59.8 NC_004683.1 + 6610 0.66 0.430163
Target:  5'- gGGCAgcGGCCCAucgcgauCAGCucg-GCGCGGGu -3'
miRNA:   3'- -UCGU--CCGGGUu------GUCGuccaCGCGCUC- -5'
18902 3' -59.8 NC_004683.1 + 34061 0.66 0.420798
Target:  5'- uGCAGGCCCAugaugugguccgGCAGCcGGUaGCgGCaGGa -3'
miRNA:   3'- uCGUCCGGGU------------UGUCGuCCA-CG-CGcUC- -5'
18902 3' -59.8 NC_004683.1 + 30561 0.67 0.402442
Target:  5'- cGGCGGGCaCCAGCGGgauCAGG-GCgGUGAc -3'
miRNA:   3'- -UCGUCCG-GGUUGUC---GUCCaCG-CGCUc -5'
18902 3' -59.8 NC_004683.1 + 32310 0.67 0.384603
Target:  5'- gGGUuGGUgC-GCAGCAGGcGCGCGAa -3'
miRNA:   3'- -UCGuCCGgGuUGUCGUCCaCGCGCUc -5'
18902 3' -59.8 NC_004683.1 + 52987 0.67 0.384603
Target:  5'- cGCAGGCgCAACGGaugacgAGG-GCGCGuGu -3'
miRNA:   3'- uCGUCCGgGUUGUCg-----UCCaCGCGCuC- -5'
18902 3' -59.8 NC_004683.1 + 6006 0.67 0.384603
Target:  5'- cGGCGGGUgCGGCcggAGCGcuGUGCGCGAc -3'
miRNA:   3'- -UCGUCCGgGUUG---UCGUc-CACGCGCUc -5'
18902 3' -59.8 NC_004683.1 + 5965 0.67 0.384603
Target:  5'- uGCuGGGCCgGcCGGUGGGUGagGCGAGg -3'
miRNA:   3'- uCG-UCCGGgUuGUCGUCCACg-CGCUC- -5'
18902 3' -59.8 NC_004683.1 + 52346 0.67 0.384603
Target:  5'- cGCAGGCCggugcgagggugCAcCGGCAGG-GUGuCGAGa -3'
miRNA:   3'- uCGUCCGG------------GUuGUCGUCCaCGC-GCUC- -5'
18902 3' -59.8 NC_004683.1 + 46928 0.67 0.375882
Target:  5'- cGC-GGCCgAACGGCucGGcgGCGUGAGu -3'
miRNA:   3'- uCGuCCGGgUUGUCGu-CCa-CGCGCUC- -5'
18902 3' -59.8 NC_004683.1 + 51017 0.67 0.367295
Target:  5'- cGGCcGGCCCAGCAGCuGGGaGgGCu-- -3'
miRNA:   3'- -UCGuCCGGGUUGUCG-UCCaCgCGcuc -5'
18902 3' -59.8 NC_004683.1 + 23187 0.68 0.358844
Target:  5'- ----cGCCac-CAGUAGGUGCGCGGGg -3'
miRNA:   3'- ucgucCGGguuGUCGUCCACGCGCUC- -5'
18902 3' -59.8 NC_004683.1 + 19830 0.68 0.358844
Target:  5'- cGCAGGCCaucuucGCGGGUugGCGCGGu -3'
miRNA:   3'- uCGUCCGGguugu-CGUCCA--CGCGCUc -5'
18902 3' -59.8 NC_004683.1 + 12122 0.68 0.358844
Target:  5'- aGGcCGGGCCaCcACGGCGauUGCGCGAGc -3'
miRNA:   3'- -UC-GUCCGG-GuUGUCGUccACGCGCUC- -5'
18902 3' -59.8 NC_004683.1 + 52245 0.68 0.35053
Target:  5'- uGCGGGCCUGcgAGUAGGUGaggGUGGGg -3'
miRNA:   3'- uCGUCCGGGUugUCGUCCACg--CGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.