miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18909 5' -59.4 NC_004683.1 + 43528 0.67 0.472327
Target:  5'- -gCGCGGggaACGCGCUGCCaCCCacugGGGUg -3'
miRNA:   3'- gaGUGCU---UGUGUGACGG-GGGcg--CCCA- -5'
18909 5' -59.4 NC_004683.1 + 11929 0.67 0.469392
Target:  5'- gCUgGCGGGCguugauucaggccaGCGC-GCCCgCGCGGGg -3'
miRNA:   3'- -GAgUGCUUG--------------UGUGaCGGGgGCGCCCa -5'
18909 5' -59.4 NC_004683.1 + 25739 0.68 0.41552
Target:  5'- cCUCaccgGCGGuuguCGCuCUGCCcaCCCGCGGGg -3'
miRNA:   3'- -GAG----UGCUu---GUGuGACGG--GGGCGCCCa -5'
18909 5' -59.4 NC_004683.1 + 37706 0.68 0.406464
Target:  5'- gUgGCGAcaaccGCGCGCUGCCCCuuccacucgCGCaGGGg -3'
miRNA:   3'- gAgUGCU-----UGUGUGACGGGG---------GCG-CCCa -5'
18909 5' -59.4 NC_004683.1 + 26607 0.68 0.368972
Target:  5'- -cCACGAACGCgACUccGCCCCCaucgacuucggucgGUGGGg -3'
miRNA:   3'- gaGUGCUUGUG-UGA--CGGGGG--------------CGCCCa -5'
18909 5' -59.4 NC_004683.1 + 47682 0.71 0.264033
Target:  5'- gCUCGCgGGGCGCACguccagcccgggcaUGCgCCCCGCGaGGg -3'
miRNA:   3'- -GAGUG-CUUGUGUG--------------ACG-GGGGCGC-CCa -5'
18909 5' -59.4 NC_004683.1 + 12020 0.71 0.246816
Target:  5'- -aCGCGGGCcaGCGC-GCCCgCGCGGGg -3'
miRNA:   3'- gaGUGCUUG--UGUGaCGGGgGCGCCCa -5'
18909 5' -59.4 NC_004683.1 + 13884 0.71 0.246196
Target:  5'- aUCACGcGGCAC-CUcgaagcccagaacGCCCCUGCGGGg -3'
miRNA:   3'- gAGUGC-UUGUGuGA-------------CGGGGGCGCCCa -5'
18909 5' -59.4 NC_004683.1 + 51205 0.72 0.228787
Target:  5'- -gCACGAGCGCGagcGCCCCUGUGGcGUc -3'
miRNA:   3'- gaGUGCUUGUGUga-CGGGGGCGCC-CA- -5'
18909 5' -59.4 NC_004683.1 + 229 0.72 0.219635
Target:  5'- aCUC-CGAGCGCcgcgaugccgccgcuGCUGCCCgCgGCGGGg -3'
miRNA:   3'- -GAGuGCUUGUG---------------UGACGGG-GgCGCCCa -5'
18909 5' -59.4 NC_004683.1 + 36660 0.74 0.171543
Target:  5'- -aCAUGAACGCGCUGCCgCCGUcgccgccccggccGGGUu -3'
miRNA:   3'- gaGUGCUUGUGUGACGGgGGCG-------------CCCA- -5'
18909 5' -59.4 NC_004683.1 + 43473 0.76 0.121359
Target:  5'- gUCACGAucaGC-CUGCCCUCGUGGGg -3'
miRNA:   3'- gAGUGCUug-UGuGACGGGGGCGCCCa -5'
18909 5' -59.4 NC_004683.1 + 12188 0.78 0.087258
Target:  5'- aUCGCGGGCACGCgGCCCgCCGCcgccGGGUc -3'
miRNA:   3'- gAGUGCUUGUGUGaCGGG-GGCG----CCCA- -5'
18909 5' -59.4 NC_004683.1 + 31204 1.07 0.000583
Target:  5'- uCUCACGAACACACUGCCCCCGCGGGUg -3'
miRNA:   3'- -GAGUGCUUGUGUGACGGGGGCGCCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.