miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18910 3' -50.9 NC_004683.1 + 25462 0.66 0.931556
Target:  5'- cAGUACCUCUAcgUGGUggccacCGCGGCg -3'
miRNA:   3'- cUUAUGGGGGUuuGCCAaca---GCGUCG- -5'
18910 3' -50.9 NC_004683.1 + 20010 0.66 0.925753
Target:  5'- ---gGCUguUCCGgugGGCGGUggugGUCGCGGCc -3'
miRNA:   3'- cuuaUGG--GGGU---UUGCCAa---CAGCGUCG- -5'
18910 3' -50.9 NC_004683.1 + 30239 0.66 0.925753
Target:  5'- ---aGCUCaucgCAGACGGgugGUCGguGCg -3'
miRNA:   3'- cuuaUGGGg---GUUUGCCaa-CAGCguCG- -5'
18910 3' -50.9 NC_004683.1 + 9995 0.66 0.925753
Target:  5'- --cUGCCCCUGAucgccacgcGCGG-UGUgGUGGCg -3'
miRNA:   3'- cuuAUGGGGGUU---------UGCCaACAgCGUCG- -5'
18910 3' -50.9 NC_004683.1 + 49659 0.66 0.919656
Target:  5'- ---cACCgCC--GCGGUUGggggCGCGGUg -3'
miRNA:   3'- cuuaUGGgGGuuUGCCAACa---GCGUCG- -5'
18910 3' -50.9 NC_004683.1 + 15129 0.66 0.919656
Target:  5'- ---aACUCU---ACGG-UGUCGCAGCa -3'
miRNA:   3'- cuuaUGGGGguuUGCCaACAGCGUCG- -5'
18910 3' -50.9 NC_004683.1 + 29327 0.66 0.919656
Target:  5'- uGAGUGCCUUCAgcccuguuAugGGgauuaUCGCGGCg -3'
miRNA:   3'- -CUUAUGGGGGU--------UugCCaac--AGCGUCG- -5'
18910 3' -50.9 NC_004683.1 + 16494 0.66 0.906586
Target:  5'- ---cACCCCCucGGCGGUg--UGCAcGCg -3'
miRNA:   3'- cuuaUGGGGGu-UUGCCAacaGCGU-CG- -5'
18910 3' -50.9 NC_004683.1 + 48794 0.66 0.906586
Target:  5'- cGAUGCCCCUgcuuggccGCGGccuUCGCGGCc -3'
miRNA:   3'- cUUAUGGGGGuu------UGCCaacAGCGUCG- -5'
18910 3' -50.9 NC_004683.1 + 13421 0.67 0.892364
Target:  5'- ---gGCCUCUucGAGCGGgucggUGUCGUAGa -3'
miRNA:   3'- cuuaUGGGGG--UUUGCCa----ACAGCGUCg -5'
18910 3' -50.9 NC_004683.1 + 31993 0.67 0.892364
Target:  5'- ---aACCCgCGGGCGGcUGagGCGGUg -3'
miRNA:   3'- cuuaUGGGgGUUUGCCaACagCGUCG- -5'
18910 3' -50.9 NC_004683.1 + 7734 0.67 0.884831
Target:  5'- cGAggGCgCCCCGGACGuGUgGUUGCuGGCc -3'
miRNA:   3'- -CUuaUG-GGGGUUUGC-CAaCAGCG-UCG- -5'
18910 3' -50.9 NC_004683.1 + 16545 0.67 0.884831
Target:  5'- cGggUGCCCaCacuGCGGcucggUGgagCGCGGCa -3'
miRNA:   3'- -CuuAUGGG-GguuUGCCa----ACa--GCGUCG- -5'
18910 3' -50.9 NC_004683.1 + 14856 0.67 0.884831
Target:  5'- cGAcuuCUCCCAGACGGUgaUGcguUCGCGGg -3'
miRNA:   3'- -CUuauGGGGGUUUGCCA--AC---AGCGUCg -5'
18910 3' -50.9 NC_004683.1 + 19935 0.67 0.877023
Target:  5'- gGggUACCccaaggggcagCCCGAGCGGgcGaCGCGGa -3'
miRNA:   3'- -CuuAUGG-----------GGGUUUGCCaaCaGCGUCg -5'
18910 3' -50.9 NC_004683.1 + 48492 0.67 0.877023
Target:  5'- ---aGCCCCaagAAGCGGUgg-CGguGCg -3'
miRNA:   3'- cuuaUGGGGg--UUUGCCAacaGCguCG- -5'
18910 3' -50.9 NC_004683.1 + 19239 0.67 0.868948
Target:  5'- aGAGggugACCCCCugcgcgagugGAaggggcagcgcGCGGUUGUCGCcacuGCu -3'
miRNA:   3'- -CUUa---UGGGGG----------UU-----------UGCCAACAGCGu---CG- -5'
18910 3' -50.9 NC_004683.1 + 25001 0.67 0.868948
Target:  5'- uGGUACCCCgAuccuGACGGggccccgaCGCAGCg -3'
miRNA:   3'- cUUAUGGGGgU----UUGCCaaca----GCGUCG- -5'
18910 3' -50.9 NC_004683.1 + 13434 0.68 0.852021
Target:  5'- ---aACaCCCCAGugGGUg---GCAGCg -3'
miRNA:   3'- cuuaUG-GGGGUUugCCAacagCGUCG- -5'
18910 3' -50.9 NC_004683.1 + 27012 0.68 0.834116
Target:  5'- -cAUAUCaCCCucGCGGgugacgGUCGCGGUg -3'
miRNA:   3'- cuUAUGG-GGGuuUGCCaa----CAGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.