miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18910 5' -50.1 NC_004683.1 + 18240 0.66 0.941424
Target:  5'- gUGGUCGCGugGAUAUCGCCaGGCAgGc- -3'
miRNA:   3'- -AUUAGCGC--UUGUAGCGGcUUGUgCaa -5'
18910 5' -50.1 NC_004683.1 + 55141 0.66 0.941424
Target:  5'- cUGGUgGCGcaaAUCGUCGGACugGUa -3'
miRNA:   3'- -AUUAgCGCuugUAGCGGCUUGugCAa -5'
18910 5' -50.1 NC_004683.1 + 18116 0.66 0.941424
Target:  5'- cGAUCGCGGuCGcCGCCGGcaccuaccGCACGc- -3'
miRNA:   3'- aUUAGCGCUuGUaGCGGCU--------UGUGCaa -5'
18910 5' -50.1 NC_004683.1 + 38973 0.66 0.941424
Target:  5'- --uUCGUGAcuccACAgucgccCGCCGggUACGUg -3'
miRNA:   3'- auuAGCGCU----UGUa-----GCGGCuuGUGCAa -5'
18910 5' -50.1 NC_004683.1 + 33650 0.66 0.941424
Target:  5'- cGAUUGCGGAUucuUUGCCGAcCugGg- -3'
miRNA:   3'- aUUAGCGCUUGu--AGCGGCUuGugCaa -5'
18910 5' -50.1 NC_004683.1 + 51282 0.66 0.936072
Target:  5'- ----gGUGAGgcacuCAUCGCCGAGCugGa- -3'
miRNA:   3'- auuagCGCUU-----GUAGCGGCUUGugCaa -5'
18910 5' -50.1 NC_004683.1 + 4333 0.66 0.936072
Target:  5'- ---gCGCGuuccuCGUCGgUGAACACGUg -3'
miRNA:   3'- auuaGCGCuu---GUAGCgGCUUGUGCAa -5'
18910 5' -50.1 NC_004683.1 + 5474 0.66 0.936072
Target:  5'- cGAUCGCGcg-GUCGgUGGGCGCGUc -3'
miRNA:   3'- aUUAGCGCuugUAGCgGCUUGUGCAa -5'
18910 5' -50.1 NC_004683.1 + 48359 0.66 0.936072
Target:  5'- ----aGCGAACggUGCCGuuCGCGUUg -3'
miRNA:   3'- auuagCGCUUGuaGCGGCuuGUGCAA- -5'
18910 5' -50.1 NC_004683.1 + 2300 0.66 0.936072
Target:  5'- uUGGUCGCuGGCGUCGUcgaCGAugACGa- -3'
miRNA:   3'- -AUUAGCGcUUGUAGCG---GCUugUGCaa -5'
18910 5' -50.1 NC_004683.1 + 42310 0.66 0.929836
Target:  5'- gGAUCGCG-GCGuggguguUCGCCGugauCGCGUg -3'
miRNA:   3'- aUUAGCGCuUGU-------AGCGGCuu--GUGCAa -5'
18910 5' -50.1 NC_004683.1 + 37345 0.66 0.923849
Target:  5'- cGAUCGCGGAucCAcucgaucUCGUCGGACAgGUc -3'
miRNA:   3'- aUUAGCGCUU--GU-------AGCGGCUUGUgCAa -5'
18910 5' -50.1 NC_004683.1 + 51925 0.66 0.918203
Target:  5'- ---aCGUGAugGUCGaCGGGCGCGa- -3'
miRNA:   3'- auuaGCGCUugUAGCgGCUUGUGCaa -5'
18910 5' -50.1 NC_004683.1 + 51504 0.67 0.904782
Target:  5'- ---cCGUGccacACAUCGCCGGugGCGa- -3'
miRNA:   3'- auuaGCGCu---UGUAGCGGCUugUGCaa -5'
18910 5' -50.1 NC_004683.1 + 53393 0.67 0.904782
Target:  5'- ---aCGCGGACA-CGCCGGGCGg--- -3'
miRNA:   3'- auuaGCGCUUGUaGCGGCUUGUgcaa -5'
18910 5' -50.1 NC_004683.1 + 8370 0.67 0.897625
Target:  5'- cAGUCGgGGuGCAUCgGCCGGGCACc-- -3'
miRNA:   3'- aUUAGCgCU-UGUAG-CGGCUUGUGcaa -5'
18910 5' -50.1 NC_004683.1 + 32326 0.67 0.893191
Target:  5'- gGcgCGCGAACucggcggccugggCGCCGGugACGUc -3'
miRNA:   3'- aUuaGCGCUUGua-----------GCGGCUugUGCAa -5'
18910 5' -50.1 NC_004683.1 + 46106 0.67 0.890177
Target:  5'- -cGUCGaGAACGUCGU-GGACGCGUg -3'
miRNA:   3'- auUAGCgCUUGUAGCGgCUUGUGCAa -5'
18910 5' -50.1 NC_004683.1 + 17483 0.67 0.890177
Target:  5'- --cUCGCGGcguuAgAUCGCCGuACGCGg- -3'
miRNA:   3'- auuAGCGCU----UgUAGCGGCuUGUGCaa -5'
18910 5' -50.1 NC_004683.1 + 47717 0.67 0.890177
Target:  5'- ---cCGCGAGggucuuacgagcCGUCGCCGGccaGCGCGUc -3'
miRNA:   3'- auuaGCGCUU------------GUAGCGGCU---UGUGCAa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.