Results 21 - 40 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18911 | 5' | -60.8 | NC_004683.1 | + | 40112 | 0.67 | 0.378927 |
Target: 5'- aGacCAGCCGGACGcGGCcGC-GACCa -3' miRNA: 3'- gCacGUCGGCCUGCaCCG-CGuCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 9439 | 0.67 | 0.378927 |
Target: 5'- uCGUGCAGCCaGGGauca-CGCAGAUCGg -3' miRNA: 3'- -GCACGUCGG-CCUgcaccGCGUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 10515 | 0.67 | 0.370516 |
Target: 5'- uCG-GCGGCCGGACGgaacagcGGCuccaAGACCu -3' miRNA: 3'- -GCaCGUCGGCCUGCa------CCGcg--UCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 3656 | 0.68 | 0.362232 |
Target: 5'- gCGUGCGGCCcggccgccgcuGGAgaGUGuGCGgCAGGCCc -3' miRNA: 3'- -GCACGUCGG-----------CCUg-CAC-CGC-GUCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 9099 | 0.68 | 0.337382 |
Target: 5'- uCGUGCAGCCcgugacgGGAuuccaUGUGGCGuCGGuCCa -3' miRNA: 3'- -GCACGUCGG-------CCU-----GCACCGC-GUCuGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 20017 | 0.68 | 0.322775 |
Target: 5'- cCG-GUGGgCGGugGUGGuCGCggccAGACCGg -3' miRNA: 3'- -GCaCGUCgGCCugCACC-GCG----UCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 12677 | 0.69 | 0.286615 |
Target: 5'- gGUGC--CCGGGCGaucgucGGCGCGGAUCGc -3' miRNA: 3'- gCACGucGGCCUGCa-----CCGCGUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 51122 | 0.7 | 0.27307 |
Target: 5'- --cGCGGCCGGcGCGaagGGcCGCAaGGCCGa -3' miRNA: 3'- gcaCGUCGGCC-UGCa--CC-GCGU-CUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 14810 | 0.7 | 0.27307 |
Target: 5'- gCGUGaauGGUCGGGCGgacGGaccgccaGCAGACCGg -3' miRNA: 3'- -GCACg--UCGGCCUGCa--CCg------CGUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 7617 | 0.7 | 0.24146 |
Target: 5'- gGUGCAGgggcaCCGGccguCGUGGUGCGGGCa- -3' miRNA: 3'- gCACGUC-----GGCCu---GCACCGCGUCUGgc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 15064 | 0.71 | 0.235517 |
Target: 5'- uGUGCAGCC-GAUGccggaUGGCGUAGACg- -3' miRNA: 3'- gCACGUCGGcCUGC-----ACCGCGUCUGgc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 6011 | 0.72 | 0.197283 |
Target: 5'- gGUGCGGCCGGAgCGcUGuGCGC-GACgGg -3' miRNA: 3'- gCACGUCGGCCU-GC-AC-CGCGuCUGgC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 20491 | 0.72 | 0.197283 |
Target: 5'- gGUGgGGCCGGugGUGG---AGGCCGg -3' miRNA: 3'- gCACgUCGGCCugCACCgcgUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 15658 | 0.72 | 0.192285 |
Target: 5'- cCGU-CAGCCuGGGCGggUGGCGCggugAGGCCGg -3' miRNA: 3'- -GCAcGUCGG-CCUGC--ACCGCG----UCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 479 | 0.72 | 0.182622 |
Target: 5'- gGUGCGGCCGGGCau-GCGUcgGGACCu -3' miRNA: 3'- gCACGUCGGCCUGcacCGCG--UCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 43135 | 0.72 | 0.182622 |
Target: 5'- gCGUGCGGCU--GCGUGGC-CGGAUCGa -3' miRNA: 3'- -GCACGUCGGccUGCACCGcGUCUGGC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 48021 | 0.73 | 0.160325 |
Target: 5'- -cUGCAGCCGauGAgGUGGCGCcGGCCc -3' miRNA: 3'- gcACGUCGGC--CUgCACCGCGuCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 2133 | 0.75 | 0.113132 |
Target: 5'- gGUGguGgCGGGCGUGGCcgugcugGCGGGCCu -3' miRNA: 3'- gCACguCgGCCUGCACCG-------CGUCUGGc -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 31301 | 0.75 | 0.110417 |
Target: 5'- uGUGCAGCugCGGGcCGUGGCGguGGCgGc -3' miRNA: 3'- gCACGUCG--GCCU-GCACCGCguCUGgC- -5' |
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18911 | 5' | -60.8 | NC_004683.1 | + | 32506 | 1.09 | 0.000349 |
Target: 5'- uCGUGCAGCCGGACGUGGCGCAGACCGg -3' miRNA: 3'- -GCACGUCGGCCUGCACCGCGUCUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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