miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18918 3' -58 NC_004683.1 + 48056 0.66 0.554943
Target:  5'- uGGCgUCCGACAgaGGCAGGUuGUUggCCAGc -3'
miRNA:   3'- cUCGgAGGUUGU--UCGUCCA-CGG--GGUC- -5'
18918 3' -58 NC_004683.1 + 1149 0.66 0.554943
Target:  5'- cGGCCggUCCGAgGAGUuGGcGCCCCGu -3'
miRNA:   3'- cUCGG--AGGUUgUUCGuCCaCGGGGUc -5'
18918 3' -58 NC_004683.1 + 56922 0.66 0.544227
Target:  5'- cGAGCCUCUGACcuGCGGaaacgcaGaCCCCGGg -3'
miRNA:   3'- -CUCGGAGGUUGuuCGUCca-----C-GGGGUC- -5'
18918 3' -58 NC_004683.1 + 14566 0.66 0.523005
Target:  5'- uGAGCCagcUCCAGCccAAGguGGcUGCCgCCGu -3'
miRNA:   3'- -CUCGG---AGGUUG--UUCguCC-ACGG-GGUc -5'
18918 3' -58 NC_004683.1 + 45595 0.66 0.523005
Target:  5'- cGGCCUggUCGACGccgGGguGGUGCCCg-- -3'
miRNA:   3'- cUCGGA--GGUUGU---UCguCCACGGGguc -5'
18918 3' -58 NC_004683.1 + 42537 0.66 0.512513
Target:  5'- cGGUUUCCG---GGUAGGUGCgCCAGa -3'
miRNA:   3'- cUCGGAGGUuguUCGUCCACGgGGUC- -5'
18918 3' -58 NC_004683.1 + 25957 0.67 0.481587
Target:  5'- cGGGCUgUCCGACGGGCuGG-GUCUCGGu -3'
miRNA:   3'- -CUCGG-AGGUUGUUCGuCCaCGGGGUC- -5'
18918 3' -58 NC_004683.1 + 29852 0.67 0.481587
Target:  5'- aAGCCaUCCAACGAGU-GGU-CCgCCAGg -3'
miRNA:   3'- cUCGG-AGGUUGUUCGuCCAcGG-GGUC- -5'
18918 3' -58 NC_004683.1 + 45120 0.67 0.471479
Target:  5'- -cGCa-CCAGCGGGCAGGU-CUCCGGu -3'
miRNA:   3'- cuCGgaGGUUGUUCGUCCAcGGGGUC- -5'
18918 3' -58 NC_004683.1 + 33464 0.67 0.465466
Target:  5'- -cGCCUCCAgcucgACAcgcuugaucugugggGGCAGGUGCCgacguUCAGc -3'
miRNA:   3'- cuCGGAGGU-----UGU---------------UCGUCCACGG-----GGUC- -5'
18918 3' -58 NC_004683.1 + 16532 0.67 0.46148
Target:  5'- -uGCaugCC-ACGGGCGGGUGCCCaCAc -3'
miRNA:   3'- cuCGga-GGuUGUUCGUCCACGGG-GUc -5'
18918 3' -58 NC_004683.1 + 26083 0.67 0.451594
Target:  5'- cGAGCaggcCCAAC-AGCAGGUGCgCgAGu -3'
miRNA:   3'- -CUCGga--GGUUGuUCGUCCACGgGgUC- -5'
18918 3' -58 NC_004683.1 + 15776 0.67 0.441825
Target:  5'- cGGCCUUCGccGCGucGGCGGGUGUCCa-- -3'
miRNA:   3'- cUCGGAGGU--UGU--UCGUCCACGGGguc -5'
18918 3' -58 NC_004683.1 + 7785 0.68 0.413255
Target:  5'- uAGCCagC-ACGAGguGGUacccGCCCCAGa -3'
miRNA:   3'- cUCGGagGuUGUUCguCCA----CGGGGUC- -5'
18918 3' -58 NC_004683.1 + 23000 0.68 0.413255
Target:  5'- cGAGCUggUCCAccGCGAGCGGGgaccgGUgCCGGc -3'
miRNA:   3'- -CUCGG--AGGU--UGUUCGUCCa----CGgGGUC- -5'
18918 3' -58 NC_004683.1 + 13004 0.68 0.394853
Target:  5'- cGGCUUCCugcCGGGCGccGGUgGCCCCGGc -3'
miRNA:   3'- cUCGGAGGuu-GUUCGU--CCA-CGGGGUC- -5'
18918 3' -58 NC_004683.1 + 7720 0.71 0.281651
Target:  5'- cAGCgUCCA-CAAGCcgaGGGcGCCCCGGa -3'
miRNA:   3'- cUCGgAGGUuGUUCG---UCCaCGGGGUC- -5'
18918 3' -58 NC_004683.1 + 47160 0.71 0.267755
Target:  5'- gGAuCCUCgGgaaccgacGCGAGCAGGUGCgCCAGg -3'
miRNA:   3'- -CUcGGAGgU--------UGUUCGUCCACGgGGUC- -5'
18918 3' -58 NC_004683.1 + 36545 1.07 0.000575
Target:  5'- uGAGCCUCCAACAAGCAGGUGCCCCAGu -3'
miRNA:   3'- -CUCGGAGGUUGUUCGUCCACGGGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.