miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18918 5' -60.3 NC_004683.1 + 17930 0.66 0.494312
Target:  5'- gGCCAGgacGGCACCaugcaGuGgGACCcGACCGa -3'
miRNA:   3'- gUGGUC---CCGUGGg----CuCgCUGG-UUGGC- -5'
18918 5' -60.3 NC_004683.1 + 20496 0.66 0.484426
Target:  5'- gGCCGGuGGUggaGgCCGGGCGGgUAACCa -3'
miRNA:   3'- gUGGUC-CCG---UgGGCUCGCUgGUUGGc -5'
18918 5' -60.3 NC_004683.1 + 11324 0.66 0.484426
Target:  5'- gGCCAGGaaGCGCUCG-GUcuGAUCAACCa -3'
miRNA:   3'- gUGGUCC--CGUGGGCuCG--CUGGUUGGc -5'
18918 5' -60.3 NC_004683.1 + 30272 0.66 0.484425
Target:  5'- cCGCCGGcGCACUCGAcGUGAC--ACCGg -3'
miRNA:   3'- -GUGGUCcCGUGGGCU-CGCUGguUGGC- -5'
18918 5' -60.3 NC_004683.1 + 19057 0.66 0.484425
Target:  5'- gGCCugggguGGGCACCUGgaAGUG-CCAgcGCCGu -3'
miRNA:   3'- gUGGu-----CCCGUGGGC--UCGCuGGU--UGGC- -5'
18918 5' -60.3 NC_004683.1 + 46372 0.66 0.474635
Target:  5'- uGCCGgagcGGGC-CCCGuGgGGCCGcuACCGc -3'
miRNA:   3'- gUGGU----CCCGuGGGCuCgCUGGU--UGGC- -5'
18918 5' -60.3 NC_004683.1 + 53112 0.66 0.474635
Target:  5'- gGCCGGGGCGuuCGucguuggaGGUGACCAugUc -3'
miRNA:   3'- gUGGUCCCGUggGC--------UCGCUGGUugGc -5'
18918 5' -60.3 NC_004683.1 + 16618 0.66 0.464944
Target:  5'- gGCCGGGGgAUCCGcAGCcaGACCggUgGg -3'
miRNA:   3'- gUGGUCCCgUGGGC-UCG--CUGGuuGgC- -5'
18918 5' -60.3 NC_004683.1 + 7384 0.66 0.464944
Target:  5'- -cCCGGaGGCGCUCGAccuggauucgGCGGCCGGgCGc -3'
miRNA:   3'- guGGUC-CCGUGGGCU----------CGCUGGUUgGC- -5'
18918 5' -60.3 NC_004683.1 + 44720 0.66 0.464944
Target:  5'- cCACCAGcgccgggcaucGGCACgCCGGGCGcuCCcGCCc -3'
miRNA:   3'- -GUGGUC-----------CCGUG-GGCUCGCu-GGuUGGc -5'
18918 5' -60.3 NC_004683.1 + 36130 0.66 0.46398
Target:  5'- gGCCGGuGGCggucacgaaacugACCCGGGUGACCG--CGa -3'
miRNA:   3'- gUGGUC-CCG-------------UGGGCUCGCUGGUugGC- -5'
18918 5' -60.3 NC_004683.1 + 38907 0.66 0.459179
Target:  5'- cCGCCGGGGCgucguuagggaggcuGCCC-AGUGcaucccGCCGACCu -3'
miRNA:   3'- -GUGGUCCCG---------------UGGGcUCGC------UGGUUGGc -5'
18918 5' -60.3 NC_004683.1 + 43958 0.66 0.455357
Target:  5'- uCGCCGGGGC-CaCCG-GCGcCCGGCa- -3'
miRNA:   3'- -GUGGUCCCGuG-GGCuCGCuGGUUGgc -5'
18918 5' -60.3 NC_004683.1 + 44171 0.66 0.455357
Target:  5'- uCGCCcGGGUAUCCGccagcGGCGuauCCcGCCGg -3'
miRNA:   3'- -GUGGuCCCGUGGGC-----UCGCu--GGuUGGC- -5'
18918 5' -60.3 NC_004683.1 + 15090 0.66 0.455357
Target:  5'- aCGCUcGGGCGCCCcu-CGGCCuGCCa -3'
miRNA:   3'- -GUGGuCCCGUGGGcucGCUGGuUGGc -5'
18918 5' -60.3 NC_004683.1 + 4622 0.66 0.455357
Target:  5'- uGCCGGuGCACCCucGC-ACCGGCCu -3'
miRNA:   3'- gUGGUCcCGUGGGcuCGcUGGUUGGc -5'
18918 5' -60.3 NC_004683.1 + 35998 0.66 0.445878
Target:  5'- gACCAGGGCAUCagauGAcCGugUAGCCc -3'
miRNA:   3'- gUGGUCCCGUGGg---CUcGCugGUUGGc -5'
18918 5' -60.3 NC_004683.1 + 40005 0.66 0.445878
Target:  5'- aACCgaGGGGCACCagcccauuUGGGCGAUCGucccCCGa -3'
miRNA:   3'- gUGG--UCCCGUGG--------GCUCGCUGGUu---GGC- -5'
18918 5' -60.3 NC_004683.1 + 2757 0.66 0.43651
Target:  5'- gGCCGcGGCgaGCUCGgcGGCGGCCAACuCGg -3'
miRNA:   3'- gUGGUcCCG--UGGGC--UCGCUGGUUG-GC- -5'
18918 5' -60.3 NC_004683.1 + 21890 0.66 0.43651
Target:  5'- aCACCGGuGGCG-CUGAGCGGgCuGCUGg -3'
miRNA:   3'- -GUGGUC-CCGUgGGCUCGCUgGuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.