miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18918 5' -60.3 NC_004683.1 + 36579 1.08 0.00044
Target:  5'- aCACCAGGGCACCCGAGCGACCAACCGu -3'
miRNA:   3'- -GUGGUCCCGUGGGCUCGCUGGUUGGC- -5'
18918 5' -60.3 NC_004683.1 + 41885 0.8 0.057215
Target:  5'- gGCCgaGGGGCGCCCGAGCGucuacGCCAuCCGc -3'
miRNA:   3'- gUGG--UCCCGUGGGCUCGC-----UGGUuGGC- -5'
18918 5' -60.3 NC_004683.1 + 19930 0.78 0.075369
Target:  5'- cCGCCGGGGUaccccaaggggcaGCCCGAGCGGgCGACgCGg -3'
miRNA:   3'- -GUGGUCCCG-------------UGGGCUCGCUgGUUG-GC- -5'
18918 5' -60.3 NC_004683.1 + 11983 0.75 0.127027
Target:  5'- aCACCGGGGCugucGCCCGAuCaGCUAGCCGg -3'
miRNA:   3'- -GUGGUCCCG----UGGGCUcGcUGGUUGGC- -5'
18918 5' -60.3 NC_004683.1 + 48697 0.72 0.183996
Target:  5'- gACCAuGGUugCCGAGUGACacaAACCGc -3'
miRNA:   3'- gUGGUcCCGugGGCUCGCUGg--UUGGC- -5'
18918 5' -60.3 NC_004683.1 + 50302 0.72 0.188831
Target:  5'- aCACCAGcGGCGCgCC--GCGGCCAGCaCGg -3'
miRNA:   3'- -GUGGUC-CCGUG-GGcuCGCUGGUUG-GC- -5'
18918 5' -60.3 NC_004683.1 + 16439 0.72 0.209302
Target:  5'- --aCAGGGCGaUCGAGUGGCCcGCCGa -3'
miRNA:   3'- gugGUCCCGUgGGCUCGCUGGuUGGC- -5'
18918 5' -60.3 NC_004683.1 + 4920 0.72 0.209302
Target:  5'- aGCCAGGGCGCgUCGGGCacgguucCCAGCCu -3'
miRNA:   3'- gUGGUCCCGUG-GGCUCGcu-----GGUUGGc -5'
18918 5' -60.3 NC_004683.1 + 45606 0.72 0.209302
Target:  5'- aCGCCGGGGUgguGCCCGA-CGACgAcACCGa -3'
miRNA:   3'- -GUGGUCCCG---UGGGCUcGCUGgU-UGGC- -5'
18918 5' -60.3 NC_004683.1 + 13398 0.72 0.209302
Target:  5'- gGCCAGGGUgGCCCGcaGGCGGCC--CCGu -3'
miRNA:   3'- gUGGUCCCG-UGGGC--UCGCUGGuuGGC- -5'
18918 5' -60.3 NC_004683.1 + 12230 0.71 0.21471
Target:  5'- cCGCCGGGGCgggagcGCCCG-GCGuGCCGAugcCCGg -3'
miRNA:   3'- -GUGGUCCCG------UGGGCuCGC-UGGUU---GGC- -5'
18918 5' -60.3 NC_004683.1 + 9679 0.71 0.21471
Target:  5'- gCGCuCAuGGGCACCaacgcGGUGGCCGACCGu -3'
miRNA:   3'- -GUG-GU-CCCGUGGgc---UCGCUGGUUGGC- -5'
18918 5' -60.3 NC_004683.1 + 40926 0.71 0.237553
Target:  5'- gACCcGGGCG-CCGAGCuGACCGcGCCGc -3'
miRNA:   3'- gUGGuCCCGUgGGCUCG-CUGGU-UGGC- -5'
18918 5' -60.3 NC_004683.1 + 38333 0.71 0.243573
Target:  5'- gGCCaAGGGUGCCCGucccaguuGUGACCA-CCGc -3'
miRNA:   3'- gUGG-UCCCGUGGGCu-------CGCUGGUuGGC- -5'
18918 5' -60.3 NC_004683.1 + 2026 0.7 0.255993
Target:  5'- aGCCGcGGGCGCCggugaGAGCGAaguggCGACCGu -3'
miRNA:   3'- gUGGU-CCCGUGGg----CUCGCUg----GUUGGC- -5'
18918 5' -60.3 NC_004683.1 + 13018 0.7 0.262396
Target:  5'- gCGCCGGuGGC-CCCG-GCGACUu-CCGg -3'
miRNA:   3'- -GUGGUC-CCGuGGGCuCGCUGGuuGGC- -5'
18918 5' -60.3 NC_004683.1 + 4983 0.7 0.282384
Target:  5'- --gCAGGGCGCCguGGCGACUacGACCGc -3'
miRNA:   3'- gugGUCCCGUGGgcUCGCUGG--UUGGC- -5'
18918 5' -60.3 NC_004683.1 + 20400 0.7 0.282384
Target:  5'- aGCUggcGGcGCACCCgGGGCGGCCAACgGc -3'
miRNA:   3'- gUGGu--CC-CGUGGG-CUCGCUGGUUGgC- -5'
18918 5' -60.3 NC_004683.1 + 39634 0.69 0.28931
Target:  5'- cCGCCGGGGUggcgACCCGAG-GGCC-GCUa -3'
miRNA:   3'- -GUGGUCCCG----UGGGCUCgCUGGuUGGc -5'
18918 5' -60.3 NC_004683.1 + 550 0.69 0.30356
Target:  5'- gACCuacGGC-CCCGAgGUGGCCGACCu -3'
miRNA:   3'- gUGGuc-CCGuGGGCU-CGCUGGUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.