miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18918 5' -60.3 NC_004683.1 + 53783 0.66 0.43651
Target:  5'- gCAUCAcGGGUgaguACCCGcGaUGACCAACCa -3'
miRNA:   3'- -GUGGU-CCCG----UGGGCuC-GCUGGUUGGc -5'
18918 5' -60.3 NC_004683.1 + 39755 0.67 0.427256
Target:  5'- gUACgGGGGCGCCgGGGuCGGCaccauGACCu -3'
miRNA:   3'- -GUGgUCCCGUGGgCUC-GCUGg----UUGGc -5'
18918 5' -60.3 NC_004683.1 + 33912 0.67 0.41812
Target:  5'- gCACCAGGcCG-CCGAGCaggcgacaccgaGACCGACCc -3'
miRNA:   3'- -GUGGUCCcGUgGGCUCG------------CUGGUUGGc -5'
18918 5' -60.3 NC_004683.1 + 51398 0.67 0.409103
Target:  5'- aGCCAGGGCGacaCCGcacgugucGCGGCCuggGCUGa -3'
miRNA:   3'- gUGGUCCCGUg--GGCu-------CGCUGGu--UGGC- -5'
18918 5' -60.3 NC_004683.1 + 45441 0.67 0.409103
Target:  5'- uGCCAGGGCAUCCagcacGGCG-CCGaacGCUGc -3'
miRNA:   3'- gUGGUCCCGUGGGc----UCGCuGGU---UGGC- -5'
18918 5' -60.3 NC_004683.1 + 26235 0.67 0.409103
Target:  5'- gGCCGucgauGGGCuACUCGAugaGCGugCAGCCa -3'
miRNA:   3'- gUGGU-----CCCG-UGGGCU---CGCugGUUGGc -5'
18918 5' -60.3 NC_004683.1 + 49719 0.67 0.391439
Target:  5'- -gUCGGGGguCUcgauCGAGCuGGCCGGCCGg -3'
miRNA:   3'- guGGUCCCguGG----GCUCG-CUGGUUGGC- -5'
18918 5' -60.3 NC_004683.1 + 49806 0.67 0.391439
Target:  5'- -cCCGGGcGCACCCGucucAGCGacGCCcACCa -3'
miRNA:   3'- guGGUCC-CGUGGGC----UCGC--UGGuUGGc -5'
18918 5' -60.3 NC_004683.1 + 23724 0.67 0.391439
Target:  5'- gCACCGGcGGCggcaccACCCcGGCG-CCGACCc -3'
miRNA:   3'- -GUGGUC-CCG------UGGGcUCGCuGGUUGGc -5'
18918 5' -60.3 NC_004683.1 + 46622 0.67 0.382796
Target:  5'- gGCCGccGCGCCCGu-CGAUCAGCCGa -3'
miRNA:   3'- gUGGUccCGUGGGCucGCUGGUUGGC- -5'
18918 5' -60.3 NC_004683.1 + 51121 0.67 0.382795
Target:  5'- uCGCCAGccaGGCGCCUuGGCGGCgguGCCGc -3'
miRNA:   3'- -GUGGUC---CCGUGGGcUCGCUGgu-UGGC- -5'
18918 5' -60.3 NC_004683.1 + 45946 0.67 0.382795
Target:  5'- aCugCAGGG-ACCgcagguuguccuCGAGCGACUGGCCc -3'
miRNA:   3'- -GugGUCCCgUGG------------GCUCGCUGGUUGGc -5'
18918 5' -60.3 NC_004683.1 + 10114 0.68 0.37428
Target:  5'- uCACCAGGccgugguguGUGCCCGAcgcgGUGACCGugGCCa -3'
miRNA:   3'- -GUGGUCC---------CGUGGGCU----CGCUGGU--UGGc -5'
18918 5' -60.3 NC_004683.1 + 31426 0.68 0.37428
Target:  5'- gGCCAGGGC-----GGCGACCAgGCCGa -3'
miRNA:   3'- gUGGUCCCGugggcUCGCUGGU-UGGC- -5'
18918 5' -60.3 NC_004683.1 + 50115 0.68 0.365893
Target:  5'- gGCCguAGGGCuugguaagcguGCCCuuGCGGCgCGACCGg -3'
miRNA:   3'- gUGG--UCCCG-----------UGGGcuCGCUG-GUUGGC- -5'
18918 5' -60.3 NC_004683.1 + 46011 0.68 0.357638
Target:  5'- gGCgAGGuGCuGCCCGAcgcgGCGGCCGAgCGg -3'
miRNA:   3'- gUGgUCC-CG-UGGGCU----CGCUGGUUgGC- -5'
18918 5' -60.3 NC_004683.1 + 33036 0.68 0.357637
Target:  5'- gGCCAGGGUgaccgGCCCGA-CGAugccgUCGGCCGc -3'
miRNA:   3'- gUGGUCCCG-----UGGGCUcGCU-----GGUUGGC- -5'
18918 5' -60.3 NC_004683.1 + 31044 0.68 0.348708
Target:  5'- uGCCAGGugaugaacgcguaGUACCCGAacaccgagGCGGCCAGCg- -3'
miRNA:   3'- gUGGUCC-------------CGUGGGCU--------CGCUGGUUGgc -5'
18918 5' -60.3 NC_004683.1 + 6371 0.68 0.333662
Target:  5'- cCGCguGGuGCGCCCcGGCGACCuguUCGa -3'
miRNA:   3'- -GUGguCC-CGUGGGcUCGCUGGuu-GGC- -5'
18918 5' -60.3 NC_004683.1 + 7731 0.68 0.333661
Target:  5'- aGCCgAGGGCGCCCcGGacgugugguugcUGGCCGAUCGg -3'
miRNA:   3'- gUGG-UCCCGUGGGcUC------------GCUGGUUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.