miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18919 5' -55.6 NC_004683.1 + 37298 0.66 0.765108
Target:  5'- uGGgUGCGGAGCGAUUg-CGCGGcgCGg -3'
miRNA:   3'- uCUgGCGCCUUGCUAGagGCGCUa-GC- -5'
18919 5' -55.6 NC_004683.1 + 52496 0.66 0.764108
Target:  5'- cGGGCUcggaggguuccgaGCGGGugGAUCgCUGCGcGUCGu -3'
miRNA:   3'- -UCUGG-------------CGCCUugCUAGaGGCGC-UAGC- -5'
18919 5' -55.6 NC_004683.1 + 39484 0.66 0.755043
Target:  5'- -uGCCGCGuacGGCGAUCUaacgCCGCGAggCGu -3'
miRNA:   3'- ucUGGCGCc--UUGCUAGA----GGCGCUa-GC- -5'
18919 5' -55.6 NC_004683.1 + 5924 0.66 0.755043
Target:  5'- gGGACUGUGGAccACGAUCggcaaCgGCGAg-- -3'
miRNA:   3'- -UCUGGCGCCU--UGCUAGa----GgCGCUagc -5'
18919 5' -55.6 NC_004683.1 + 53621 0.66 0.744856
Target:  5'- -aGCUGCGGcGCGAUCaggcccgCCGCGAc-- -3'
miRNA:   3'- ucUGGCGCCuUGCUAGa------GGCGCUagc -5'
18919 5' -55.6 NC_004683.1 + 24494 0.66 0.743831
Target:  5'- cGGCauacguGCGGGACGcugaugcAUCUCCGCGGg-- -3'
miRNA:   3'- uCUGg-----CGCCUUGC-------UAGAGGCGCUagc -5'
18919 5' -55.6 NC_004683.1 + 26353 0.66 0.734559
Target:  5'- gAGGCCGCGu--UGGccCUCCGCGAcgaaUCGg -3'
miRNA:   3'- -UCUGGCGCcuuGCUa-GAGGCGCU----AGC- -5'
18919 5' -55.6 NC_004683.1 + 8969 0.66 0.734559
Target:  5'- gAGGCCGaCGGAuuagccagcCGGUCgacgCCGagaaGAUCGg -3'
miRNA:   3'- -UCUGGC-GCCUu--------GCUAGa---GGCg---CUAGC- -5'
18919 5' -55.6 NC_004683.1 + 44268 0.66 0.724162
Target:  5'- aAGACgaCGCGGcucgacgcGGCGAUCcgcgCCGaCGAUCGc -3'
miRNA:   3'- -UCUG--GCGCC--------UUGCUAGa---GGC-GCUAGC- -5'
18919 5' -55.6 NC_004683.1 + 2756 0.66 0.724162
Target:  5'- cGGCCGCGG--CGAgCUCgGCGG-CGg -3'
miRNA:   3'- uCUGGCGCCuuGCUaGAGgCGCUaGC- -5'
18919 5' -55.6 NC_004683.1 + 31311 0.66 0.723118
Target:  5'- cGGGCCGUGGcgguggcGGCGAugUCgCCGUGAUgGg -3'
miRNA:   3'- -UCUGGCGCC-------UUGCU--AGaGGCGCUAgC- -5'
18919 5' -55.6 NC_004683.1 + 33183 0.66 0.713678
Target:  5'- cAGGCUGCGGAcGCGAUCgUUGUuGUCGc -3'
miRNA:   3'- -UCUGGCGCCU-UGCUAGaGGCGcUAGC- -5'
18919 5' -55.6 NC_004683.1 + 5345 0.66 0.712625
Target:  5'- cGACCGCGGGcucggggGCGggCUugaUCGCG-UCGa -3'
miRNA:   3'- uCUGGCGCCU-------UGCuaGA---GGCGCuAGC- -5'
18919 5' -55.6 NC_004683.1 + 37345 0.67 0.703116
Target:  5'- cGAUCGCGGAuccacuCGAUCUCguCGgacaGGUCGa -3'
miRNA:   3'- uCUGGCGCCUu-----GCUAGAG--GCg---CUAGC- -5'
18919 5' -55.6 NC_004683.1 + 21161 0.67 0.703116
Target:  5'- cGGCCGCGGAccACGGUgUCgGCa---- -3'
miRNA:   3'- uCUGGCGCCU--UGCUAgAGgCGcuagc -5'
18919 5' -55.6 NC_004683.1 + 55406 0.67 0.703116
Target:  5'- cGGGCCGcCGGGACGAUUccaaCGUgGAUCu -3'
miRNA:   3'- -UCUGGC-GCCUUGCUAGag--GCG-CUAGc -5'
18919 5' -55.6 NC_004683.1 + 35974 0.67 0.703116
Target:  5'- -cGCUGCGGGACGGUCg--GCGA-CGg -3'
miRNA:   3'- ucUGGCGCCUUGCUAGaggCGCUaGC- -5'
18919 5' -55.6 NC_004683.1 + 11802 0.67 0.692487
Target:  5'- cGACCG-GGcAACG-UCgCUGCGGUCGg -3'
miRNA:   3'- uCUGGCgCC-UUGCuAGaGGCGCUAGC- -5'
18919 5' -55.6 NC_004683.1 + 5102 0.67 0.67107
Target:  5'- cGGAUCGCGcGGugGugcagCUCgagCGCGGUCGg -3'
miRNA:   3'- -UCUGGCGC-CUugCua---GAG---GCGCUAGC- -5'
18919 5' -55.6 NC_004683.1 + 16394 0.67 0.660304
Target:  5'- uGugCGCgccugguucGGAuCGAUCcugaCCGCGAUCGa -3'
miRNA:   3'- uCugGCG---------CCUuGCUAGa---GGCGCUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.