miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18921 5' -55.2 NC_004683.1 + 18630 0.66 0.775069
Target:  5'- gUCGUgcuggcccugGUGGGGUUCuucgugcCCGGCGACcucggUGCg -3'
miRNA:   3'- -AGCG----------CACUCCAAGu------GGCCGCUG-----AUGg -5'
18921 5' -55.2 NC_004683.1 + 32789 0.66 0.775069
Target:  5'- gUCGCG---GGccaGCCGGCGcgaGCUGCCa -3'
miRNA:   3'- -AGCGCacuCCaagUGGCCGC---UGAUGG- -5'
18921 5' -55.2 NC_004683.1 + 5343 0.66 0.7691
Target:  5'- gUGCGUGccaugggccugaccaAGGccga-CGGCGGCUACCu -3'
miRNA:   3'- aGCGCAC---------------UCCaagugGCCGCUGAUGG- -5'
18921 5' -55.2 NC_004683.1 + 4461 0.66 0.765093
Target:  5'- -gGCGUGGGacucgucgUCGCUGGCGucucGCUGCg -3'
miRNA:   3'- agCGCACUCca------AGUGGCCGC----UGAUGg -5'
18921 5' -55.2 NC_004683.1 + 8180 0.66 0.765093
Target:  5'- cCGCGgccaaGcAGGggCAUCGGCGAaUGCUg -3'
miRNA:   3'- aGCGCa----C-UCCaaGUGGCCGCUgAUGG- -5'
18921 5' -55.2 NC_004683.1 + 4962 0.66 0.754984
Target:  5'- gCGCGUcGAggccGGUUCcucgcagggcGCCguGGCGACUACg -3'
miRNA:   3'- aGCGCA-CU----CCAAG----------UGG--CCGCUGAUGg -5'
18921 5' -55.2 NC_004683.1 + 39607 0.66 0.744753
Target:  5'- aCGCGauacAGGUagUCGCCGGUGA--ACCu -3'
miRNA:   3'- aGCGCac--UCCA--AGUGGCCGCUgaUGG- -5'
18921 5' -55.2 NC_004683.1 + 25884 0.66 0.744753
Target:  5'- -gGCGUcGA-GUUCGCCGGgcaGACgcugGCCg -3'
miRNA:   3'- agCGCA-CUcCAAGUGGCCg--CUGa---UGG- -5'
18921 5' -55.2 NC_004683.1 + 51647 0.66 0.734411
Target:  5'- gUCGCGcugccGGGGUUCGuuGGUGGCcaggucagaaACCg -3'
miRNA:   3'- -AGCGCa----CUCCAAGUggCCGCUGa---------UGG- -5'
18921 5' -55.2 NC_004683.1 + 13410 0.67 0.72397
Target:  5'- cUCGag-GGGGUggUCGCCGGUGug-GCCg -3'
miRNA:   3'- -AGCgcaCUCCA--AGUGGCCGCugaUGG- -5'
18921 5' -55.2 NC_004683.1 + 47821 0.67 0.72397
Target:  5'- gCGUGUGAcg-UCGCUGGCGGa-ACCa -3'
miRNA:   3'- aGCGCACUccaAGUGGCCGCUgaUGG- -5'
18921 5' -55.2 NC_004683.1 + 17469 0.67 0.72397
Target:  5'- cCGCGUGAccgcgaguuccuGGUgcagAUCGGCGACggcaaaGCCg -3'
miRNA:   3'- aGCGCACU------------CCAag--UGGCCGCUGa-----UGG- -5'
18921 5' -55.2 NC_004683.1 + 33687 0.67 0.713439
Target:  5'- gUCGCGUucGAGG-UCAagcaUGGCGcACUccGCCg -3'
miRNA:   3'- -AGCGCA--CUCCaAGUg---GCCGC-UGA--UGG- -5'
18921 5' -55.2 NC_004683.1 + 46063 0.67 0.70283
Target:  5'- aCGUGccccGGUUCGCCgaGGCGcaccGCUACCa -3'
miRNA:   3'- aGCGCacu-CCAAGUGG--CCGC----UGAUGG- -5'
18921 5' -55.2 NC_004683.1 + 44101 0.67 0.70283
Target:  5'- aCGCGaucgucGAGGUg-ACCGGCG-CUgaGCCg -3'
miRNA:   3'- aGCGCa-----CUCCAagUGGCCGCuGA--UGG- -5'
18921 5' -55.2 NC_004683.1 + 26972 0.67 0.70283
Target:  5'- aCGCGUGAG---CGCCGGgcaGGCcgGCCa -3'
miRNA:   3'- aGCGCACUCcaaGUGGCCg--CUGa-UGG- -5'
18921 5' -55.2 NC_004683.1 + 18075 0.67 0.70283
Target:  5'- gUCGcCGUcGGcGUUCACCgcagggauGGCGcCUGCCa -3'
miRNA:   3'- -AGC-GCAcUC-CAAGUGG--------CCGCuGAUGG- -5'
18921 5' -55.2 NC_004683.1 + 52084 0.67 0.70283
Target:  5'- aCGCGgGAGGcg-ACCGGUGACcGCa -3'
miRNA:   3'- aGCGCaCUCCaagUGGCCGCUGaUGg -5'
18921 5' -55.2 NC_004683.1 + 23716 0.68 0.659832
Target:  5'- cCGCG-GcGG--CACCGGCGGCggcACCa -3'
miRNA:   3'- aGCGCaCuCCaaGUGGCCGCUGa--UGG- -5'
18921 5' -55.2 NC_004683.1 + 23095 0.68 0.627282
Target:  5'- cUCuCGUGGGcGUUCGCCaGCGGCaGCg -3'
miRNA:   3'- -AGcGCACUC-CAAGUGGcCGCUGaUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.