Results 1 - 10 of 10 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 18923 | 5' | -56.4 | NC_004683.1 | + | 55385 | 0.66 | 0.671669 |
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Target: 5'- aUGCGGGUGuUGCGUUGcgG-GUcGGGGu -3' miRNA: 3'- -ACGUCCGC-GCGCAGCuaCuCAaCCUC- -5' |
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| 18923 | 5' | -56.4 | NC_004683.1 | + | 428 | 0.67 | 0.58433 |
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Target: 5'- cGCAGGCgguggcugGCGCGgCGGUcGAGgcGGAu -3' miRNA: 3'- aCGUCCG--------CGCGCaGCUA-CUCaaCCUc -5' |
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| 18923 | 5' | -56.4 | NC_004683.1 | + | 4807 | 0.69 | 0.478988 |
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Target: 5'- uUGCGGGCcUGCGaguaGGUGAGggUGGGGg -3' miRNA: 3'- -ACGUCCGcGCGCag--CUACUCa-ACCUC- -5' |
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| 18923 | 5' | -56.4 | NC_004683.1 | + | 24729 | 0.69 | 0.478988 |
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Target: 5'- aGCAGGCGCGCGaacUCGgcGGccUGGGc -3' miRNA: 3'- aCGUCCGCGCGC---AGCuaCUcaACCUc -5' |
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| 18923 | 5' | -56.4 | NC_004683.1 | + | 47462 | 0.7 | 0.429861 |
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Target: 5'- cGCAGGUGaugaaaCGCGUCGucacguGUGGGccgUGGAGg -3' miRNA: 3'- aCGUCCGC------GCGCAGC------UACUCa--ACCUC- -5' |
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| 18923 | 5' | -56.4 | NC_004683.1 | + | 24776 | 0.7 | 0.429861 |
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Target: 5'- cGCGgcGGCGCGCGgccauggccUCGAUGAcGUcGGGGu -3' miRNA: 3'- aCGU--CCGCGCGC---------AGCUACU-CAaCCUC- -5' |
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| 18923 | 5' | -56.4 | NC_004683.1 | + | 19157 | 0.71 | 0.341176 |
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Target: 5'- -cCAGGCGCGcCGUCGGUGGcGUcgUGGGu -3' miRNA: 3'- acGUCCGCGC-GCAGCUACU-CA--ACCUc -5' |
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| 18923 | 5' | -56.4 | NC_004683.1 | + | 39806 | 0.74 | 0.240545 |
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Target: 5'- gGCcGGagccaGCG-GUCGAUGAGUUGGGGu -3' miRNA: 3'- aCGuCCg----CGCgCAGCUACUCAACCUC- -5' |
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| 18923 | 5' | -56.4 | NC_004683.1 | + | 332 | 0.76 | 0.17993 |
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Target: 5'- aGCAGGCGCuGCGguuggCGAUGcGGcUGGAGa -3' miRNA: 3'- aCGUCCGCG-CGCa----GCUAC-UCaACCUC- -5' |
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| 18923 | 5' | -56.4 | NC_004683.1 | + | 40251 | 1.08 | 0.00091 |
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Target: 5'- cUGCAGGCGCGCGUCGAUGAGUUGGAGu -3' miRNA: 3'- -ACGUCCGCGCGCAGCUACUCAACCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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