miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18925 3' -55.8 NC_004683.1 + 8693 0.66 0.672282
Target:  5'- cAGCGGccauGGUgAUUCGCUGCGcagccacucGCCggcGGCg -3'
miRNA:   3'- -UUGCU----CCAgUAAGUGACGC---------CGGa--CCG- -5'
18925 3' -55.8 NC_004683.1 + 42568 0.66 0.661256
Target:  5'- gAGCGAGGcCGagCGCgccgcgGCGGUCggGGCc -3'
miRNA:   3'- -UUGCUCCaGUaaGUGa-----CGCCGGa-CCG- -5'
18925 3' -55.8 NC_004683.1 + 37764 0.67 0.632487
Target:  5'- uGACaAGGUCAUUgacCACUucccaaguaaguugaGCGGCC-GGCa -3'
miRNA:   3'- -UUGcUCCAGUAA---GUGA---------------CGCCGGaCCG- -5'
18925 3' -55.8 NC_004683.1 + 41862 0.67 0.616983
Target:  5'- cGGCGcaacGGUCG-UCACUGgcaGGCCgaggGGCg -3'
miRNA:   3'- -UUGCu---CCAGUaAGUGACg--CCGGa---CCG- -5'
18925 3' -55.8 NC_004683.1 + 11799 0.67 0.605924
Target:  5'- gAACGAccGGgCAacgUCGCUGCGGUC-GGCc -3'
miRNA:   3'- -UUGCU--CCaGUa--AGUGACGCCGGaCCG- -5'
18925 3' -55.8 NC_004683.1 + 30510 0.67 0.594887
Target:  5'- -cCGAGGUgGaugUCGCUGaGGCUgaUGGCg -3'
miRNA:   3'- uuGCUCCAgUa--AGUGACgCCGG--ACCG- -5'
18925 3' -55.8 NC_004683.1 + 278 0.68 0.508434
Target:  5'- cGACGGuGGUCAaggaGCUgaccGCGGCCgGGCg -3'
miRNA:   3'- -UUGCU-CCAGUaag-UGA----CGCCGGaCCG- -5'
18925 3' -55.8 NC_004683.1 + 41075 0.69 0.473263
Target:  5'- -uCGAGGUCGUcCugcauucgggcgaGCUucucagcggccucaGCGGCCUGGCc -3'
miRNA:   3'- uuGCUCCAGUAaG-------------UGA--------------CGCCGGACCG- -5'
18925 3' -55.8 NC_004683.1 + 5102 0.69 0.467182
Target:  5'- --aGAGGUCAagggcgaGCUGCGuGCCcgGGCg -3'
miRNA:   3'- uugCUCCAGUaag----UGACGC-CGGa-CCG- -5'
18925 3' -55.8 NC_004683.1 + 31295 0.7 0.418172
Target:  5'- --gGGGGUUGUgcaGCUGCGGgCCgUGGCg -3'
miRNA:   3'- uugCUCCAGUAag-UGACGCC-GG-ACCG- -5'
18925 3' -55.8 NC_004683.1 + 20070 0.7 0.418172
Target:  5'- cGACGAGGUUcg-CACagucgaugGUGGCCUcGGCg -3'
miRNA:   3'- -UUGCUCCAGuaaGUGa-------CGCCGGA-CCG- -5'
18925 3' -55.8 NC_004683.1 + 9758 0.75 0.219289
Target:  5'- cGACGAGGUC--UCGC-GCGGCCgguggGGUg -3'
miRNA:   3'- -UUGCUCCAGuaAGUGaCGCCGGa----CCG- -5'
18925 3' -55.8 NC_004683.1 + 40653 1.08 0.000861
Target:  5'- gAACGAGGUCAUUCACUGCGGCCUGGCc -3'
miRNA:   3'- -UUGCUCCAGUAAGUGACGCCGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.