miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18929 3' -52.6 NC_004683.1 + 55031 0.66 0.867806
Target:  5'- uCAUGCAGCcgcgggcgcCGGUGAGAGcgaaGUGgcgACCg -3'
miRNA:   3'- uGUGCGUCGa--------GCCGCUCUC----UAUa--UGG- -5'
18929 3' -52.6 NC_004683.1 + 52722 0.66 0.867806
Target:  5'- aGCGCGguGCcCGaCGGGucAUGUGCCc -3'
miRNA:   3'- -UGUGCguCGaGCcGCUCucUAUAUGG- -5'
18929 3' -52.6 NC_004683.1 + 52116 0.66 0.851038
Target:  5'- gGCACGguuccCAGcCUCGGCGcGGGAac-GCCg -3'
miRNA:   3'- -UGUGC-----GUC-GAGCCGCuCUCUauaUGG- -5'
18929 3' -52.6 NC_004683.1 + 44463 0.66 0.851038
Target:  5'- uCGUGCGGCUCGGCGAucucgccgucGAuGUAgucgGCCg -3'
miRNA:   3'- uGUGCGUCGAGCCGCU----------CUcUAUa---UGG- -5'
18929 3' -52.6 NC_004683.1 + 33460 0.66 0.850174
Target:  5'- uACGCGCcuccAGCUCGacacgcuugaucuGUGGGGGcagGUGCCg -3'
miRNA:   3'- -UGUGCG----UCGAGC-------------CGCUCUCua-UAUGG- -5'
18929 3' -52.6 NC_004683.1 + 3706 0.66 0.842293
Target:  5'- -uGCGCGauGC-CGGCGAGGacGGUGaGCCa -3'
miRNA:   3'- ugUGCGU--CGaGCCGCUCU--CUAUaUGG- -5'
18929 3' -52.6 NC_004683.1 + 22967 0.66 0.833321
Target:  5'- --cCGCGGUUCaaguaccgaGGCGAGuGAUGgACCa -3'
miRNA:   3'- uguGCGUCGAG---------CCGCUCuCUAUaUGG- -5'
18929 3' -52.6 NC_004683.1 + 51371 0.66 0.833321
Target:  5'- -gGCGgcccucCAGCUCGGCGAuGAG---UGCCu -3'
miRNA:   3'- ugUGC------GUCGAGCCGCU-CUCuauAUGG- -5'
18929 3' -52.6 NC_004683.1 + 2889 0.66 0.833321
Target:  5'- gACugGCGaccaccCUCGGUGuAGAGGUA-ACCg -3'
miRNA:   3'- -UGugCGUc-----GAGCCGC-UCUCUAUaUGG- -5'
18929 3' -52.6 NC_004683.1 + 13302 0.67 0.82413
Target:  5'- uACACGguGacgCUCGGCGcagcAGGGAUgguggGUACUg -3'
miRNA:   3'- -UGUGCguC---GAGCCGC----UCUCUA-----UAUGG- -5'
18929 3' -52.6 NC_004683.1 + 51837 0.67 0.813779
Target:  5'- uUugGCGGCgaaguacUCGGCGAGGGcgGcGCg -3'
miRNA:   3'- uGugCGUCG-------AGCCGCUCUCuaUaUGg -5'
18929 3' -52.6 NC_004683.1 + 15164 0.67 0.805132
Target:  5'- --cCGCAacaUCGGCGAucaGGAUAUGCCg -3'
miRNA:   3'- uguGCGUcg-AGCCGCUc--UCUAUAUGG- -5'
18929 3' -52.6 NC_004683.1 + 8747 0.67 0.805132
Target:  5'- -gGCGC-GUUCGGUGAGGGcaacgGCCc -3'
miRNA:   3'- ugUGCGuCGAGCCGCUCUCuaua-UGG- -5'
18929 3' -52.6 NC_004683.1 + 28351 0.67 0.795347
Target:  5'- cGCcCGCAGCUCGGC-AucGAUG-ACCu -3'
miRNA:   3'- -UGuGCGUCGAGCCGcUcuCUAUaUGG- -5'
18929 3' -52.6 NC_004683.1 + 21277 0.67 0.795347
Target:  5'- ---aGCAGCa-GGCGGGGGAUcgACa -3'
miRNA:   3'- ugugCGUCGagCCGCUCUCUAuaUGg -5'
18929 3' -52.6 NC_004683.1 + 12679 0.67 0.78939
Target:  5'- cGCACGaGGUugUCGGCGAGuccgggcagacccucGGAaAUGCCg -3'
miRNA:   3'- -UGUGCgUCG--AGCCGCUC---------------UCUaUAUGG- -5'
18929 3' -52.6 NC_004683.1 + 54922 0.67 0.785385
Target:  5'- --gUGCGGCUCgGGUGAGucGAUGUAUg -3'
miRNA:   3'- uguGCGUCGAG-CCGCUCu-CUAUAUGg -5'
18929 3' -52.6 NC_004683.1 + 20393 0.67 0.785385
Target:  5'- cACugGCAGCUggCGGCGcacccGGGGcg--GCCa -3'
miRNA:   3'- -UGugCGUCGA--GCCGC-----UCUCuauaUGG- -5'
18929 3' -52.6 NC_004683.1 + 8251 0.68 0.775259
Target:  5'- gGCACGCuGGCcgaucucgacuUCGGCGAGAcgcuGAUcaaGCCg -3'
miRNA:   3'- -UGUGCG-UCG-----------AGCCGCUCU----CUAua-UGG- -5'
18929 3' -52.6 NC_004683.1 + 2749 0.68 0.76498
Target:  5'- -uGCGCGGCggccgCGGCGAGcucGGcgGcgGCCa -3'
miRNA:   3'- ugUGCGUCGa----GCCGCUC---UCuaUa-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.