miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18929 5' -59.6 NC_004683.1 + 14726 0.66 0.511466
Target:  5'- aGUGGUCGCU--GCC-CGAGGgCgcgGCCa -3'
miRNA:   3'- -CACCAGUGGagCGGcGCUCUgGa--CGG- -5'
18929 5' -59.6 NC_004683.1 + 8635 0.66 0.508431
Target:  5'- cUGGUCGCCgcUCGCCcaggaugggcagcuGCGcgacGACCUGUUc -3'
miRNA:   3'- cACCAGUGG--AGCGG--------------CGCu---CUGGACGG- -5'
18929 5' -59.6 NC_004683.1 + 9562 0.66 0.502383
Target:  5'- uGUGGguucggcagcucccaCGCCUCGCCGuCGccgagguuguAGACCUGaCUg -3'
miRNA:   3'- -CACCa--------------GUGGAGCGGC-GC----------UCUGGAC-GG- -5'
18929 5' -59.6 NC_004683.1 + 26253 0.66 0.501379
Target:  5'- uGUGG-CGCCgguucaugaUCGCgaggaucaGCGAGACC-GCCg -3'
miRNA:   3'- -CACCaGUGG---------AGCGg-------CGCUCUGGaCGG- -5'
18929 5' -59.6 NC_004683.1 + 25002 0.66 0.491379
Target:  5'- aGUGGuUCAUCcgCGCCGaGAccGAgCUGCCg -3'
miRNA:   3'- -CACC-AGUGGa-GCGGCgCU--CUgGACGG- -5'
18929 5' -59.6 NC_004683.1 + 24780 0.66 0.491379
Target:  5'- -cGGUCGCggCGgCGCGcGGCCaugGCCu -3'
miRNA:   3'- caCCAGUGgaGCgGCGCuCUGGa--CGG- -5'
18929 5' -59.6 NC_004683.1 + 8578 0.66 0.481473
Target:  5'- -cGGUCguguaGCCaccaGCCGCGGGAguCgUGCCg -3'
miRNA:   3'- caCCAG-----UGGag--CGGCGCUCU--GgACGG- -5'
18929 5' -59.6 NC_004683.1 + 27547 0.66 0.481473
Target:  5'- aUGGcuccagCGCgCUCGCUGCGGcuGCCUGCg -3'
miRNA:   3'- cACCa-----GUG-GAGCGGCGCUc-UGGACGg -5'
18929 5' -59.6 NC_004683.1 + 758 0.66 0.479504
Target:  5'- -aGGUUcuGCCgCGCCGCGAuGACCacgaacucgaacGCCg -3'
miRNA:   3'- caCCAG--UGGaGCGGCGCU-CUGGa-----------CGG- -5'
18929 5' -59.6 NC_004683.1 + 43942 0.66 0.47069
Target:  5'- -aGGUaGCaCUCGCCGUugacaccgggcucGAGACCgagcgcgGCCg -3'
miRNA:   3'- caCCAgUG-GAGCGGCG-------------CUCUGGa------CGG- -5'
18929 5' -59.6 NC_004683.1 + 53552 0.67 0.465829
Target:  5'- -aGGUCACCaucgagcagggcaaCGCCGCGgcAGACgCcgGCCg -3'
miRNA:   3'- caCCAGUGGa-------------GCGGCGC--UCUG-Ga-CGG- -5'
18929 5' -59.6 NC_004683.1 + 45554 0.67 0.461959
Target:  5'- -cGGggCGCgUCGCgCGCGAGAagUGCUg -3'
miRNA:   3'- caCCa-GUGgAGCG-GCGCUCUggACGG- -5'
18929 5' -59.6 NC_004683.1 + 43058 0.67 0.461959
Target:  5'- -cGG-CACCUUGCCcuguuuGCGAG-CCUcaGCCu -3'
miRNA:   3'- caCCaGUGGAGCGG------CGCUCuGGA--CGG- -5'
18929 5' -59.6 NC_004683.1 + 13708 0.67 0.460994
Target:  5'- -aGGUCGCauccgguUUCGCCgguGCGcGGCCUGCg -3'
miRNA:   3'- caCCAGUG-------GAGCGG---CGCuCUGGACGg -5'
18929 5' -59.6 NC_004683.1 + 25718 0.67 0.456186
Target:  5'- -cGGccugcugCugCUCGCCGCGucgcagcuguucaucGGGCCgcUGCCg -3'
miRNA:   3'- caCCa------GugGAGCGGCGC---------------UCUGG--ACGG- -5'
18929 5' -59.6 NC_004683.1 + 46041 0.67 0.452359
Target:  5'- -cGGUC-CCgCGCCacgauGUGGGACgUGCCc -3'
miRNA:   3'- caCCAGuGGaGCGG-----CGCUCUGgACGG- -5'
18929 5' -59.6 NC_004683.1 + 50833 0.67 0.452359
Target:  5'- -aGuGUCGCgagcCGUCGCGAGACCgucgcGCCu -3'
miRNA:   3'- caC-CAGUGga--GCGGCGCUCUGGa----CGG- -5'
18929 5' -59.6 NC_004683.1 + 24445 0.67 0.452359
Target:  5'- -cGGcCACCgagCGCCGCaAGAUCUGg- -3'
miRNA:   3'- caCCaGUGGa--GCGGCGcUCUGGACgg -5'
18929 5' -59.6 NC_004683.1 + 5017 0.67 0.433493
Target:  5'- aUGcGcCGCUggcCGCCGCucuGAGGCUUGCCg -3'
miRNA:   3'- cAC-CaGUGGa--GCGGCG---CUCUGGACGG- -5'
18929 5' -59.6 NC_004683.1 + 25473 0.67 0.433493
Target:  5'- cGUGGUgGCCacCGCgGCGcuGGCCgucGCCg -3'
miRNA:   3'- -CACCAgUGGa-GCGgCGCu-CUGGa--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.