miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18930 3' -61.8 NC_004683.1 + 20261 0.66 0.404034
Target:  5'- gGUCGUUcCUGGUguugAGGCCGcGGGcccgaucGUGCa -3'
miRNA:   3'- -CAGCAGuGACCG----UCCGGCuCCC-------CGCG- -5'
18930 3' -61.8 NC_004683.1 + 45757 0.66 0.387466
Target:  5'- uGUgG-CGCUGGCGGuuCGAGuacGGGUGCg -3'
miRNA:   3'- -CAgCaGUGACCGUCcgGCUC---CCCGCG- -5'
18930 3' -61.8 NC_004683.1 + 57042 0.66 0.378927
Target:  5'- aUCGUCGCUGGuCAcgacGCCGAcccaccccccGGGGUcuGCg -3'
miRNA:   3'- cAGCAGUGACC-GUc---CGGCU----------CCCCG--CG- -5'
18930 3' -61.8 NC_004683.1 + 20221 0.66 0.370516
Target:  5'- uUCGgaUCGCUGGCgcagucGGuGCCGGGuaucGGCGCg -3'
miRNA:   3'- cAGC--AGUGACCG------UC-CGGCUCc---CCGCG- -5'
18930 3' -61.8 NC_004683.1 + 22128 0.66 0.370516
Target:  5'- -gCGUCAaaggggugaagUUGGCGGGCCccGGGGaUGCc -3'
miRNA:   3'- caGCAGU-----------GACCGUCCGGcuCCCC-GCG- -5'
18930 3' -61.8 NC_004683.1 + 24797 0.67 0.338163
Target:  5'- cGUCGaCGCgGGCGuugcGGUCGcGGcGGCGCg -3'
miRNA:   3'- -CAGCaGUGaCCGU----CCGGCuCC-CCGCG- -5'
18930 3' -61.8 NC_004683.1 + 1138 0.67 0.338163
Target:  5'- cUCGUCAagcgcGGCcGGuCCGAGGaguuGGCGCc -3'
miRNA:   3'- cAGCAGUga---CCGuCC-GGCUCC----CCGCG- -5'
18930 3' -61.8 NC_004683.1 + 40295 0.67 0.338163
Target:  5'- -gCG-CGCUGGCAucGCCGAGGGcauCGCc -3'
miRNA:   3'- caGCaGUGACCGUc-CGGCUCCCc--GCG- -5'
18930 3' -61.8 NC_004683.1 + 24105 0.67 0.330403
Target:  5'- cUCGUCGCUcgacgGGUAGGugaacCCGGccGGGGCGg -3'
miRNA:   3'- cAGCAGUGA-----CCGUCC-----GGCU--CCCCGCg -5'
18930 3' -61.8 NC_004683.1 + 45077 0.67 0.322775
Target:  5'- -aCGUgGCUGGCaucuccAGGUCGAGaaacucGGCGCu -3'
miRNA:   3'- caGCAgUGACCG------UCCGGCUCc-----CCGCG- -5'
18930 3' -61.8 NC_004683.1 + 9492 0.67 0.322775
Target:  5'- aGUCgGUgGCUugGGCggcggccuccccGGGCCGAauGGGGUGCu -3'
miRNA:   3'- -CAG-CAgUGA--CCG------------UCCGGCU--CCCCGCG- -5'
18930 3' -61.8 NC_004683.1 + 9406 0.68 0.299967
Target:  5'- uUCGUgGgCUGGCuauuugguuugguGGGCUGGaugagcucgcGGGGCGCa -3'
miRNA:   3'- cAGCAgU-GACCG-------------UCCGGCU----------CCCCGCG- -5'
18930 3' -61.8 NC_004683.1 + 40607 0.69 0.260044
Target:  5'- -gCGaUCGagUGGCccGCCGAGGGGgGCg -3'
miRNA:   3'- caGC-AGUg-ACCGucCGGCUCCCCgCG- -5'
18930 3' -61.8 NC_004683.1 + 41603 0.69 0.24146
Target:  5'- uGUCGUCGuCUGGUcuuaGCCGGauccGGGCGCg -3'
miRNA:   3'- -CAGCAGU-GACCGuc--CGGCUc---CCCGCG- -5'
18930 3' -61.8 NC_004683.1 + 49341 0.69 0.235517
Target:  5'- cGUCGUCg--GGCAGcguccacaaGCCGA-GGGCGCc -3'
miRNA:   3'- -CAGCAGugaCCGUC---------CGGCUcCCCGCG- -5'
18930 3' -61.8 NC_004683.1 + 6461 0.7 0.229696
Target:  5'- uGUCGUCGaa--CAGGUCGccGGGGCGCa -3'
miRNA:   3'- -CAGCAGUgaccGUCCGGCu-CCCCGCG- -5'
18930 3' -61.8 NC_004683.1 + 47478 0.7 0.218419
Target:  5'- cGUCGUCAC-GuGUGGGCCGuGGaGGCcgGCa -3'
miRNA:   3'- -CAGCAGUGaC-CGUCCGGCuCC-CCG--CG- -5'
18930 3' -61.8 NC_004683.1 + 16604 0.7 0.21296
Target:  5'- gGUCGacCugUGGC-GGCCGGGGGaucCGCa -3'
miRNA:   3'- -CAGCa-GugACCGuCCGGCUCCCc--GCG- -5'
18930 3' -61.8 NC_004683.1 + 46720 0.7 0.202393
Target:  5'- gGUCGUCAUggugcgGGUcGGCUGAucgacGGGCGCg -3'
miRNA:   3'- -CAGCAGUGa-----CCGuCCGGCUc----CCCGCG- -5'
18930 3' -61.8 NC_004683.1 + 2150 0.71 0.197283
Target:  5'- -cCGU-GCUGGCGGGCCu-GGGGUGg -3'
miRNA:   3'- caGCAgUGACCGUCCGGcuCCCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.