miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18931 5' -63.1 NC_004683.1 + 40692 0.66 0.367954
Target:  5'- cCUGCUcgaGGUGGUCCucgaaCCGCUCaGCCGa -3'
miRNA:   3'- -GACGA---CCGCCAGGca---GGCGGGcUGGU- -5'
18931 5' -63.1 NC_004683.1 + 21952 0.67 0.299308
Target:  5'- -gGCgGGCGG-CCG-CCGaguucaCCGGCCAg -3'
miRNA:   3'- gaCGaCCGCCaGGCaGGCg-----GGCUGGU- -5'
18931 5' -63.1 NC_004683.1 + 48004 0.67 0.292323
Target:  5'- -gGCUGGCuGaaUCCGUCgGCCUcGCCGg -3'
miRNA:   3'- gaCGACCGcC--AGGCAGgCGGGcUGGU- -5'
18931 5' -63.1 NC_004683.1 + 37130 0.67 0.283434
Target:  5'- uUGCUGGCGGcgUCUgacaugaagacgaaGUCCaCUCGACCGc -3'
miRNA:   3'- gACGACCGCC--AGG--------------CAGGcGGGCUGGU- -5'
18931 5' -63.1 NC_004683.1 + 8533 0.68 0.253082
Target:  5'- aCUGCagGGCGG-CCa-CCGCaCCGGCCu -3'
miRNA:   3'- -GACGa-CCGCCaGGcaGGCG-GGCUGGu -5'
18931 5' -63.1 NC_004683.1 + 33238 0.69 0.21289
Target:  5'- -gGUUGGCGGcCCGUUU-CCCGGCUAg -3'
miRNA:   3'- gaCGACCGCCaGGCAGGcGGGCUGGU- -5'
18931 5' -63.1 NC_004683.1 + 12052 0.71 0.169385
Target:  5'- -cGCUGGCcacuGGUgaaCCGUCCGgCCGuCCAg -3'
miRNA:   3'- gaCGACCG----CCA---GGCAGGCgGGCuGGU- -5'
18931 5' -63.1 NC_004683.1 + 56658 0.72 0.144973
Target:  5'- cCUGCUGGCcGagaaCCGUCuccaugCGCCCGGCCGc -3'
miRNA:   3'- -GACGACCGcCa---GGCAG------GCGGGCUGGU- -5'
18931 5' -63.1 NC_004683.1 + 21910 0.72 0.126794
Target:  5'- gCUGCUGGUGcGUCgGgcaaucccggcaaUCCGCCCGGCg- -3'
miRNA:   3'- -GACGACCGC-CAGgC-------------AGGCGGGCUGgu -5'
18931 5' -63.1 NC_004683.1 + 42308 0.74 0.089599
Target:  5'- uUGgUGGCGGUCUggaaGUCCuuguaggGCCCGGCCAc -3'
miRNA:   3'- gACgACCGCCAGG----CAGG-------CGGGCUGGU- -5'
18931 5' -63.1 NC_004683.1 + 42152 1.07 0.000278
Target:  5'- uCUGCUGGCGGUCCGUCCGCCCGACCAu -3'
miRNA:   3'- -GACGACCGCCAGGCAGGCGGGCUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.