miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18934 5' -55.5 NC_004683.1 + 49325 0.66 0.748118
Target:  5'- cCCGAcugCGCGCUGUGCggcugcccGCACCa- -3'
miRNA:   3'- cGGCUccaGCGCGACAUGa-------UGUGGcu -5'
18934 5' -55.5 NC_004683.1 + 12419 0.66 0.748118
Target:  5'- cGCCGAc-UCGaCGCUGUugcGCGCCGAc -3'
miRNA:   3'- -CGGCUccAGC-GCGACAugaUGUGGCU- -5'
18934 5' -55.5 NC_004683.1 + 45629 0.66 0.748118
Target:  5'- gGCCaGAGGUUGUgGUUGUcGCgGCGCCGc -3'
miRNA:   3'- -CGG-CUCCAGCG-CGACA-UGaUGUGGCu -5'
18934 5' -55.5 NC_004683.1 + 1847 0.66 0.737782
Target:  5'- gGCCGGcGUUGCGUUGUugauGCccGCGCCGu -3'
miRNA:   3'- -CGGCUcCAGCGCGACA----UGa-UGUGGCu -5'
18934 5' -55.5 NC_004683.1 + 56991 0.66 0.737782
Target:  5'- gGUCaGAGGcUCGCGggGUgccGCUGCAUCGGc -3'
miRNA:   3'- -CGG-CUCC-AGCGCgaCA---UGAUGUGGCU- -5'
18934 5' -55.5 NC_004683.1 + 21702 0.66 0.727342
Target:  5'- gGUCGgugcGGGUgGCGCUGgcaGCgcCGCCGGa -3'
miRNA:   3'- -CGGC----UCCAgCGCGACa--UGauGUGGCU- -5'
18934 5' -55.5 NC_004683.1 + 7584 0.66 0.727342
Target:  5'- gGCCGAGGUCGaCGCgGgcaucaacgACUuCAUgGAg -3'
miRNA:   3'- -CGGCUCCAGC-GCGaCa--------UGAuGUGgCU- -5'
18934 5' -55.5 NC_004683.1 + 6458 0.66 0.727342
Target:  5'- uGCCGAGcgucGUCGCGCcagcGUcgaggACgccaGCGCCGAg -3'
miRNA:   3'- -CGGCUC----CAGCGCGa---CA-----UGa---UGUGGCU- -5'
18934 5' -55.5 NC_004683.1 + 45687 0.66 0.727342
Target:  5'- cGCUGuGGcUgGUGCUGcACUAC-CCGAc -3'
miRNA:   3'- -CGGCuCC-AgCGCGACaUGAUGuGGCU- -5'
18934 5' -55.5 NC_004683.1 + 24078 0.66 0.727342
Target:  5'- gGCCGGGG-CGgGCgguggcgugGUGaucGCGCCGAg -3'
miRNA:   3'- -CGGCUCCaGCgCGa--------CAUga-UGUGGCU- -5'
18934 5' -55.5 NC_004683.1 + 45556 0.66 0.727342
Target:  5'- uGCgGGGcgcGUCGCGCgcgagaaGUGCUGCGgCGGu -3'
miRNA:   3'- -CGgCUC---CAGCGCGa------CAUGAUGUgGCU- -5'
18934 5' -55.5 NC_004683.1 + 32764 0.66 0.727342
Target:  5'- cGCUGcAGG-CGCG-UGUuCUGCACCGu -3'
miRNA:   3'- -CGGC-UCCaGCGCgACAuGAUGUGGCu -5'
18934 5' -55.5 NC_004683.1 + 39635 0.66 0.716809
Target:  5'- cGCCGGGGUgGCGacccgagGgccGCUACGUCGAg -3'
miRNA:   3'- -CGGCUCCAgCGCga-----Ca--UGAUGUGGCU- -5'
18934 5' -55.5 NC_004683.1 + 44524 0.66 0.716809
Target:  5'- cGCCGGcgcGGUggCGCGCUgcgcgcGUugUGCGCgCGAc -3'
miRNA:   3'- -CGGCU---CCA--GCGCGA------CAugAUGUG-GCU- -5'
18934 5' -55.5 NC_004683.1 + 47708 0.66 0.706194
Target:  5'- -gCGGGGU-GUGCUGUGac-CGCCGAg -3'
miRNA:   3'- cgGCUCCAgCGCGACAUgauGUGGCU- -5'
18934 5' -55.5 NC_004683.1 + 12639 0.66 0.706194
Target:  5'- uGCCGAGGUCGU--UGUcgaGCGCCGc -3'
miRNA:   3'- -CGGCUCCAGCGcgACAugaUGUGGCu -5'
18934 5' -55.5 NC_004683.1 + 51857 0.66 0.706194
Target:  5'- gGCCGAc--CGCGCUcGaGCUGCACCa- -3'
miRNA:   3'- -CGGCUccaGCGCGA-CaUGAUGUGGcu -5'
18934 5' -55.5 NC_004683.1 + 41885 0.67 0.695508
Target:  5'- gGCCGAGGg-GCGCccgagcGU-CUACGCCa- -3'
miRNA:   3'- -CGGCUCCagCGCGa-----CAuGAUGUGGcu -5'
18934 5' -55.5 NC_004683.1 + 9531 0.67 0.652271
Target:  5'- cGCCGAGGUUGUagacCUG-ACUGCucaugaauCCGAg -3'
miRNA:   3'- -CGGCUCCAGCGc---GACaUGAUGu-------GGCU- -5'
18934 5' -55.5 NC_004683.1 + 51877 0.68 0.630502
Target:  5'- gGuuGAGGUUGCggGCUGUggAC-AUGCCGAg -3'
miRNA:   3'- -CggCUCCAGCG--CGACA--UGaUGUGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.