miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18935 5' -59.2 NC_004683.1 + 52233 0.66 0.522377
Target:  5'- -uCCGCCucGGCGAcCCGGgccgGCGCg -3'
miRNA:   3'- uuGGCGGu-CCGCUaGGCCgagaUGCG- -5'
18935 5' -59.2 NC_004683.1 + 41884 0.66 0.512087
Target:  5'- aGGCCGagGGGCGc-CCGaGCgUCUACGCc -3'
miRNA:   3'- -UUGGCggUCCGCuaGGC-CG-AGAUGCG- -5'
18935 5' -59.2 NC_004683.1 + 21215 0.66 0.512087
Target:  5'- uGCUGCUGGGCGAccaagguaUCGGCUCUGaucugGCu -3'
miRNA:   3'- uUGGCGGUCCGCUa-------GGCCGAGAUg----CG- -5'
18935 5' -59.2 NC_004683.1 + 43472 0.66 0.512087
Target:  5'- gGAUCGCCuGGCGGUUgCGGCgc--CGCc -3'
miRNA:   3'- -UUGGCGGuCCGCUAG-GCCGagauGCG- -5'
18935 5' -59.2 NC_004683.1 + 18380 0.66 0.501882
Target:  5'- uGAUgGCCGagaaggucGGCGGUgCGGCcacCUACGCc -3'
miRNA:   3'- -UUGgCGGU--------CCGCUAgGCCGa--GAUGCG- -5'
18935 5' -59.2 NC_004683.1 + 44843 0.66 0.501882
Target:  5'- cGCCGCCGGGUcguagguuugGAUCuCGGCg--ACGa -3'
miRNA:   3'- uUGGCGGUCCG----------CUAG-GCCGagaUGCg -5'
18935 5' -59.2 NC_004683.1 + 33055 0.66 0.501882
Target:  5'- uGACCGaCCgGGGCGA-CCaaGGCU-UGCGCg -3'
miRNA:   3'- -UUGGC-GG-UCCGCUaGG--CCGAgAUGCG- -5'
18935 5' -59.2 NC_004683.1 + 21551 0.66 0.499851
Target:  5'- cGCCGCCagcggggcgugugAGGCGAaaccUgCGGUagcagugUCUGCGCc -3'
miRNA:   3'- uUGGCGG-------------UCCGCU----AgGCCG-------AGAUGCG- -5'
18935 5' -59.2 NC_004683.1 + 28403 0.66 0.471827
Target:  5'- cAGCCgggGCgCGGGCGGUUCcGCUC-ACGCu -3'
miRNA:   3'- -UUGG---CG-GUCCGCUAGGcCGAGaUGCG- -5'
18935 5' -59.2 NC_004683.1 + 12101 0.67 0.452304
Target:  5'- -cCCGCgCGGGCGcgCUGGC-CcGCGUc -3'
miRNA:   3'- uuGGCG-GUCCGCuaGGCCGaGaUGCG- -5'
18935 5' -59.2 NC_004683.1 + 19234 0.67 0.44271
Target:  5'- cGCCGCCGGGuCGAaCgCGGU---GCGCg -3'
miRNA:   3'- uUGGCGGUCC-GCUaG-GCCGagaUGCG- -5'
18935 5' -59.2 NC_004683.1 + 12023 0.67 0.433231
Target:  5'- -cCCGCgCGGGCGcgCUGGCcugaaUCaACGCc -3'
miRNA:   3'- uuGGCG-GUCCGCuaGGCCG-----AGaUGCG- -5'
18935 5' -59.2 NC_004683.1 + 18215 0.67 0.43135
Target:  5'- cGGCCGCCAcGGCGugcgguaggugCCGGCggCgacCGCg -3'
miRNA:   3'- -UUGGCGGU-CCGCua---------GGCCGa-Gau-GCG- -5'
18935 5' -59.2 NC_004683.1 + 12314 0.67 0.423872
Target:  5'- cGGCaCGCCGGGCGcucccgccCCGGCgg-GCGUg -3'
miRNA:   3'- -UUG-GCGGUCCGCua------GGCCGagaUGCG- -5'
18935 5' -59.2 NC_004683.1 + 25724 0.68 0.405522
Target:  5'- gGACCGCCAccGCGAUCggCGGCagCU-CGCg -3'
miRNA:   3'- -UUGGCGGUc-CGCUAG--GCCGa-GAuGCG- -5'
18935 5' -59.2 NC_004683.1 + 39632 0.68 0.405522
Target:  5'- cGCCGCCGggguGGCGAcCCgagGGCcgCUACGUc -3'
miRNA:   3'- uUGGCGGU----CCGCUaGG---CCGa-GAUGCG- -5'
18935 5' -59.2 NC_004683.1 + 44535 0.68 0.38768
Target:  5'- uGCaCGUCGGGCG--CCGGCgcgguggcgcgCUGCGCg -3'
miRNA:   3'- uUG-GCGGUCCGCuaGGCCGa----------GAUGCG- -5'
18935 5' -59.2 NC_004683.1 + 23032 0.68 0.38768
Target:  5'- gAACCGCgGGGUGAUuuGcacCUGCGCu -3'
miRNA:   3'- -UUGGCGgUCCGCUAggCcgaGAUGCG- -5'
18935 5' -59.2 NC_004683.1 + 48260 0.68 0.38768
Target:  5'- cGCCGCC-GGCGAg-UGGCU--GCGCa -3'
miRNA:   3'- uUGGCGGuCCGCUagGCCGAgaUGCG- -5'
18935 5' -59.2 NC_004683.1 + 43221 0.68 0.38768
Target:  5'- ---aGCCAGuCGAUCCGGC-C-ACGCa -3'
miRNA:   3'- uuggCGGUCcGCUAGGCCGaGaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.