miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18937 3' -59.1 NC_004683.1 + 47699 0.66 0.528493
Target:  5'- uGCCCGauugcGGGGUGUGcuguGACCgCCGAgucgauguugugguuCCGCc -3'
miRNA:   3'- -CGGGU-----UCCCAUAC----CUGG-GGCU---------------GGCGu -5'
18937 3' -59.1 NC_004683.1 + 46315 0.66 0.514163
Target:  5'- gGCCCGAGGcg--GuGugCCCGACgUGCGg -3'
miRNA:   3'- -CGGGUUCCcauaC-CugGGGCUG-GCGU- -5'
18937 3' -59.1 NC_004683.1 + 24100 0.67 0.484015
Target:  5'- cGCUCGAcGGGUA-GGugaaCCCGGCCGgGg -3'
miRNA:   3'- -CGGGUU-CCCAUaCCug--GGGCUGGCgU- -5'
18937 3' -59.1 NC_004683.1 + 28339 0.67 0.464395
Target:  5'- gGCCgCGAGGGUGaGGAUgCaGACCaGCAc -3'
miRNA:   3'- -CGG-GUUCCCAUaCCUGgGgCUGG-CGU- -5'
18937 3' -59.1 NC_004683.1 + 39305 0.67 0.44805
Target:  5'- cGCCgCAAGGGgaugcucguuucaggGGACCgguCCGACCGgAa -3'
miRNA:   3'- -CGG-GUUCCCaua------------CCUGG---GGCUGGCgU- -5'
18937 3' -59.1 NC_004683.1 + 30030 0.67 0.445198
Target:  5'- aGCCCGAGaGGUAUGGGCCauGgggguuuuggcaGCCGa- -3'
miRNA:   3'- -CGGGUUC-CCAUACCUGGggC------------UGGCgu -5'
18937 3' -59.1 NC_004683.1 + 18146 0.68 0.435768
Target:  5'- cGCCguGGcGGcc-GGACCCCGaaGCCGCc -3'
miRNA:   3'- -CGGguUC-CCauaCCUGGGGC--UGGCGu -5'
18937 3' -59.1 NC_004683.1 + 5798 0.68 0.426453
Target:  5'- uGCCCGuGGGc-UGGuuGCCCUGGCCGg- -3'
miRNA:   3'- -CGGGUuCCCauACC--UGGGGCUGGCgu -5'
18937 3' -59.1 NC_004683.1 + 23253 0.68 0.417258
Target:  5'- gGCCCucu--UGUGGACCCgaacugcuCGACCGCAg -3'
miRNA:   3'- -CGGGuucccAUACCUGGG--------GCUGGCGU- -5'
18937 3' -59.1 NC_004683.1 + 39714 0.68 0.408185
Target:  5'- gGCCCucGGGUcgccACCCCGGCgGCGc -3'
miRNA:   3'- -CGGGuuCCCAuaccUGGGGCUGgCGU- -5'
18937 3' -59.1 NC_004683.1 + 43486 0.68 0.390414
Target:  5'- uGCCCucguGGGGgcU--GCCgCGACCGCAg -3'
miRNA:   3'- -CGGGu---UCCCauAccUGGgGCUGGCGU- -5'
18937 3' -59.1 NC_004683.1 + 46884 0.69 0.38172
Target:  5'- -aCCGGGcGGUGcuUGGACCCgCcGCCGCGc -3'
miRNA:   3'- cgGGUUC-CCAU--ACCUGGG-GcUGGCGU- -5'
18937 3' -59.1 NC_004683.1 + 55507 0.69 0.38172
Target:  5'- cCCCGAcgugcaauGGGUGUGGugCgUCGACgGCAc -3'
miRNA:   3'- cGGGUU--------CCCAUACCugG-GGCUGgCGU- -5'
18937 3' -59.1 NC_004683.1 + 32061 0.7 0.305025
Target:  5'- cGCCCGcGGGUugGUaccccgauccugacgGGGCCCCGA-CGCAg -3'
miRNA:   3'- -CGGGUuCCCA--UA---------------CCUGGGGCUgGCGU- -5'
18937 3' -59.1 NC_004683.1 + 14735 0.71 0.278789
Target:  5'- uGCCCGAGGGcgcggccaacgaucUGUGGGCgCguaugGGCCGCAa -3'
miRNA:   3'- -CGGGUUCCC--------------AUACCUGgGg----CUGGCGU- -5'
18937 3' -59.1 NC_004683.1 + 16705 0.71 0.267351
Target:  5'- cGCCCAccGGUcUGGcugcggaucCCCCGGCCGCc -3'
miRNA:   3'- -CGGGUucCCAuACCu--------GGGGCUGGCGu -5'
18937 3' -59.1 NC_004683.1 + 51013 0.72 0.234119
Target:  5'- uGCCCGAGGGc-UGGAUgCCCGacgacgagacgaucGCCGCGa -3'
miRNA:   3'- -CGGGUUCCCauACCUG-GGGC--------------UGGCGU- -5'
18937 3' -59.1 NC_004683.1 + 52729 0.72 0.22422
Target:  5'- uGCCCGAcGGGUcAUGuGCCCCGAauGCAa -3'
miRNA:   3'- -CGGGUU-CCCA-UACcUGGGGCUggCGU- -5'
18937 3' -59.1 NC_004683.1 + 40159 0.73 0.202326
Target:  5'- aCCgCGGGGuGUGUGaGACCgCGGCCGCGc -3'
miRNA:   3'- cGG-GUUCC-CAUAC-CUGGgGCUGGCGU- -5'
18937 3' -59.1 NC_004683.1 + 53412 0.75 0.147486
Target:  5'- cGCCCccGGGUGauUGGACCCCGuucgaCGCGg -3'
miRNA:   3'- -CGGGuuCCCAU--ACCUGGGGCug---GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.