miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18937 5' -51.6 NC_004683.1 + 22662 0.66 0.918212
Target:  5'- gCGUGC--GCCGAGGUgaucaCCGCGcuUgGCa -3'
miRNA:   3'- -GCACGuuUGGCUCUA-----GGCGUucAgCG- -5'
18937 5' -51.6 NC_004683.1 + 28323 0.66 0.91633
Target:  5'- -aUGCAGACCagcacgcggaagauGAGGUCCGCAauGGUa-- -3'
miRNA:   3'- gcACGUUUGG--------------CUCUAGGCGU--UCAgcg -5'
18937 5' -51.6 NC_004683.1 + 42569 0.66 0.905188
Target:  5'- --aGCGAgGCCGAGcgcgCCGCGgcGGUCGg -3'
miRNA:   3'- gcaCGUU-UGGCUCua--GGCGU--UCAGCg -5'
18937 5' -51.6 NC_004683.1 + 24321 0.66 0.898254
Target:  5'- --aGCGAcGCCGAGuucacCCGCGAGaUGCa -3'
miRNA:   3'- gcaCGUU-UGGCUCua---GGCGUUCaGCG- -5'
18937 5' -51.6 NC_004683.1 + 3833 0.66 0.898254
Target:  5'- --cGCGAugaaGCgGucguUCCGCGAGUCGCc -3'
miRNA:   3'- gcaCGUU----UGgCucu-AGGCGUUCAGCG- -5'
18937 5' -51.6 NC_004683.1 + 1345 0.66 0.897546
Target:  5'- --cGCGAcucgcucgaucccGCCGAGuucggCCGCGAG-CGCc -3'
miRNA:   3'- gcaCGUU-------------UGGCUCua---GGCGUUCaGCG- -5'
18937 5' -51.6 NC_004683.1 + 52098 0.66 0.891044
Target:  5'- --cGguGACCGcaugucAGGUCUGCGAGggacgCGCg -3'
miRNA:   3'- gcaCguUUGGC------UCUAGGCGUUCa----GCG- -5'
18937 5' -51.6 NC_004683.1 + 48340 0.66 0.891044
Target:  5'- --aGUggGCCGAcGUCCGCAucccCGCg -3'
miRNA:   3'- gcaCGuuUGGCUcUAGGCGUuca-GCG- -5'
18937 5' -51.6 NC_004683.1 + 56699 0.66 0.891044
Target:  5'- gGUGCAucgagaacgGACUGAGccCCGaCGAGgcgCGCa -3'
miRNA:   3'- gCACGU---------UUGGCUCuaGGC-GUUCa--GCG- -5'
18937 5' -51.6 NC_004683.1 + 13554 0.66 0.891044
Target:  5'- gGUGCAucucaGGCCGcacAGAUCgGCAucaAGcUCGCc -3'
miRNA:   3'- gCACGU-----UUGGC---UCUAGgCGU---UC-AGCG- -5'
18937 5' -51.6 NC_004683.1 + 48033 0.67 0.875814
Target:  5'- aGUGCc--CCGGGGUgCCGCGGaaUCGCu -3'
miRNA:   3'- gCACGuuuGGCUCUA-GGCGUUc-AGCG- -5'
18937 5' -51.6 NC_004683.1 + 45440 0.67 0.875814
Target:  5'- gCGcGCAAGacucgCGAGGUCCGCAccGcCGCa -3'
miRNA:   3'- -GCaCGUUUg----GCUCUAGGCGUu-CaGCG- -5'
18937 5' -51.6 NC_004683.1 + 48710 0.67 0.875814
Target:  5'- cCGUGCAuuggucGCgGAG-UCCGCGggcccAGUCGg -3'
miRNA:   3'- -GCACGUu-----UGgCUCuAGGCGU-----UCAGCg -5'
18937 5' -51.6 NC_004683.1 + 6491 0.67 0.875814
Target:  5'- gGUGCGcgcGACCcuuGA-CCGCGGuGUCGCu -3'
miRNA:   3'- gCACGU---UUGGcu-CUaGGCGUU-CAGCG- -5'
18937 5' -51.6 NC_004683.1 + 32820 0.67 0.875026
Target:  5'- gCG-GCAagaagagGAUCGAGAaaacUCCG-AAGUCGCg -3'
miRNA:   3'- -GCaCGU-------UUGGCUCU----AGGCgUUCAGCG- -5'
18937 5' -51.6 NC_004683.1 + 18873 0.67 0.859545
Target:  5'- aCG-GCGc-CCGAcuucGAUCCGCAGGagGCg -3'
miRNA:   3'- -GCaCGUuuGGCU----CUAGGCGUUCagCG- -5'
18937 5' -51.6 NC_004683.1 + 52571 0.67 0.859545
Target:  5'- aCGUGCuuGCCGAGccagCgCGCGAGacccUGCg -3'
miRNA:   3'- -GCACGuuUGGCUCua--G-GCGUUCa---GCG- -5'
18937 5' -51.6 NC_004683.1 + 39641 0.67 0.851038
Target:  5'- gGUgGCGAcCCGAGggCCGCuacGUCGa -3'
miRNA:   3'- gCA-CGUUuGGCUCuaGGCGuu-CAGCg -5'
18937 5' -51.6 NC_004683.1 + 30854 0.67 0.851038
Target:  5'- gCGUGCGcAGCCGAcGGUgCGCcGGU-GCg -3'
miRNA:   3'- -GCACGU-UUGGCU-CUAgGCGuUCAgCG- -5'
18937 5' -51.6 NC_004683.1 + 42323 0.68 0.842293
Target:  5'- gGUGUucGCCGuGAUCgCGUggGUUGg -3'
miRNA:   3'- gCACGuuUGGCuCUAG-GCGuuCAGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.