miRNA display CGI


Results 1 - 20 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18938 3' -54 NC_004683.1 + 41210 0.66 0.839166
Target:  5'- gCGA-AgGCCGCCGAGGaCGcCGCcaaGCa -3'
miRNA:   3'- aGCUaUgCGGUGGCUUCaGCaGCG---CG- -5'
18938 3' -54 NC_004683.1 + 36800 0.66 0.839166
Target:  5'- aCGAgugggagcaucUGCGUCACCGGc-UCGUaGCGCu -3'
miRNA:   3'- aGCU-----------AUGCGGUGGCUucAGCAgCGCG- -5'
18938 3' -54 NC_004683.1 + 21769 0.66 0.839166
Target:  5'- aCGAccGCgGCCACCGAuGGUUgGUCGgGUa -3'
miRNA:   3'- aGCUa-UG-CGGUGGCU-UCAG-CAGCgCG- -5'
18938 3' -54 NC_004683.1 + 52550 0.66 0.839166
Target:  5'- gCGAgAC-CCugCGuGGUgaUGUCGCGCg -3'
miRNA:   3'- aGCUaUGcGGugGCuUCA--GCAGCGCG- -5'
18938 3' -54 NC_004683.1 + 43979 0.66 0.839166
Target:  5'- cUCGAccACGCCgcGCCGGG--UGUCGCGg -3'
miRNA:   3'- -AGCUa-UGCGG--UGGCUUcaGCAGCGCg -5'
18938 3' -54 NC_004683.1 + 18964 0.66 0.839166
Target:  5'- cCGGgcCGCCuccugcggAUCGAAGUCGg-GCGCc -3'
miRNA:   3'- aGCUauGCGG--------UGGCUUCAGCagCGCG- -5'
18938 3' -54 NC_004683.1 + 55785 0.66 0.838293
Target:  5'- aCGGU-CGCCGCCGAcgacgccAG-CGUUGaGCa -3'
miRNA:   3'- aGCUAuGCGGUGGCU-------UCaGCAGCgCG- -5'
18938 3' -54 NC_004683.1 + 40042 0.66 0.833897
Target:  5'- aCGAgacgUACGcCCACCGugugcugcaacgcGUCGaCGCGCu -3'
miRNA:   3'- aGCU----AUGC-GGUGGCuu-----------CAGCaGCGCG- -5'
18938 3' -54 NC_004683.1 + 47664 0.66 0.830342
Target:  5'- cCGA-ACGCCGCCacgcAGcCGUCGCa- -3'
miRNA:   3'- aGCUaUGCGGUGGcu--UCaGCAGCGcg -5'
18938 3' -54 NC_004683.1 + 25337 0.66 0.830342
Target:  5'- uUCGGUGgGCgCACCGGcauucaGGUCGgcuacgacgucaUCGcCGCa -3'
miRNA:   3'- -AGCUAUgCG-GUGGCU------UCAGC------------AGC-GCG- -5'
18938 3' -54 NC_004683.1 + 15666 0.66 0.830342
Target:  5'- uUCGAgucUGCGUUGCCGccGUCGaUCGC-Ca -3'
miRNA:   3'- -AGCU---AUGCGGUGGCuuCAGC-AGCGcG- -5'
18938 3' -54 NC_004683.1 + 41726 0.66 0.830342
Target:  5'- cUCGA-GCGCCAUUGcGAGagugccauguUCGcCGCGCg -3'
miRNA:   3'- -AGCUaUGCGGUGGC-UUC----------AGCaGCGCG- -5'
18938 3' -54 NC_004683.1 + 2628 0.66 0.830342
Target:  5'- cCGA-ACGUguCCGAcGgcuuccCGUCGCGCa -3'
miRNA:   3'- aGCUaUGCGguGGCUuCa-----GCAGCGCG- -5'
18938 3' -54 NC_004683.1 + 33236 0.66 0.827655
Target:  5'- gCGGUugGCgGCCcGuuucccggcuagccAGUCGUCGCa- -3'
miRNA:   3'- aGCUAugCGgUGGcU--------------UCAGCAGCGcg -5'
18938 3' -54 NC_004683.1 + 2839 0.66 0.821313
Target:  5'- aCGAgucCGUCggguuucugGCCGAGGaUGUCGUGCa -3'
miRNA:   3'- aGCUau-GCGG---------UGGCUUCaGCAGCGCG- -5'
18938 3' -54 NC_004683.1 + 27259 0.66 0.821313
Target:  5'- cCGcUACGCCgucgucuacACCGAcaAGUCGggcaacgaGCGCa -3'
miRNA:   3'- aGCuAUGCGG---------UGGCU--UCAGCag------CGCG- -5'
18938 3' -54 NC_004683.1 + 56128 0.66 0.821313
Target:  5'- gUGGUugGCCucgcaACCGAGugugccGUCGUCGaCGg -3'
miRNA:   3'- aGCUAugCGG-----UGGCUU------CAGCAGC-GCg -5'
18938 3' -54 NC_004683.1 + 15213 0.66 0.821313
Target:  5'- aCGAaccccugcUGCGaCACCGuaGAGUUGUCGCccGCg -3'
miRNA:   3'- aGCU--------AUGCgGUGGC--UUCAGCAGCG--CG- -5'
18938 3' -54 NC_004683.1 + 39622 0.66 0.821313
Target:  5'- cCGGgguggGCGCCGCCGggGUgG-CGacccgagggcCGCu -3'
miRNA:   3'- aGCUa----UGCGGUGGCuuCAgCaGC----------GCG- -5'
18938 3' -54 NC_004683.1 + 23531 0.66 0.821313
Target:  5'- aUCGcgGUGCCGCCGAgauGGUucgaCGUCGC-Ca -3'
miRNA:   3'- -AGCuaUGCGGUGGCU---UCA----GCAGCGcG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.