miRNA display CGI


Results 21 - 40 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18938 3' -54 NC_004683.1 + 42184 0.66 0.8204
Target:  5'- aCGAUGCGCCauccaguGCCGGuagcugaccGUCGUCugaGgGCg -3'
miRNA:   3'- aGCUAUGCGG-------UGGCUu--------CAGCAG---CgCG- -5'
18938 3' -54 NC_004683.1 + 46049 0.66 0.818566
Target:  5'- gUCGAcgcguuugcggcccUugGCCACCGA-GUgauUCGUGCa -3'
miRNA:   3'- -AGCU--------------AugCGGUGGCUuCAgc-AGCGCG- -5'
18938 3' -54 NC_004683.1 + 13697 0.66 0.815802
Target:  5'- cCGAgACGCCgauGCCGGcgagcuggcccgcauAGcCGaUCGCGCg -3'
miRNA:   3'- aGCUaUGCGG---UGGCU---------------UCaGC-AGCGCG- -5'
18938 3' -54 NC_004683.1 + 26891 0.66 0.811156
Target:  5'- aCGAcgGCGUCAUcggCGAGGUCGgccgacaagaugaUCGCGUc -3'
miRNA:   3'- aGCUa-UGCGGUG---GCUUCAGC-------------AGCGCG- -5'
18938 3' -54 NC_004683.1 + 21677 0.66 0.811156
Target:  5'- -gGAcUGCGCgcaucauCACCGggGUgGUCgGUGCg -3'
miRNA:   3'- agCU-AUGCG-------GUGGCuuCAgCAG-CGCG- -5'
18938 3' -54 NC_004683.1 + 45265 0.66 0.802679
Target:  5'- aUCGGUgaACGCCgaacgACCGGGcaaCGUCGCuGCg -3'
miRNA:   3'- -AGCUA--UGCGG-----UGGCUUca-GCAGCG-CG- -5'
18938 3' -54 NC_004683.1 + 8348 0.66 0.802679
Target:  5'- cUUGAUcaGCGUCucGCCGAAGUCGagaucggccagCGUGCc -3'
miRNA:   3'- -AGCUA--UGCGG--UGGCUUCAGCa----------GCGCG- -5'
18938 3' -54 NC_004683.1 + 49253 0.66 0.802679
Target:  5'- gUGGUAC-CCGCCccaGAgcagcucuccccAGUCGcUCGCGCa -3'
miRNA:   3'- aGCUAUGcGGUGG---CU------------UCAGC-AGCGCG- -5'
18938 3' -54 NC_004683.1 + 52452 0.66 0.801728
Target:  5'- gCGGUGCucccguGCCGCgCGAcaucaccacgcagGGUC-UCGCGCg -3'
miRNA:   3'- aGCUAUG------CGGUG-GCU-------------UCAGcAGCGCG- -5'
18938 3' -54 NC_004683.1 + 44530 0.67 0.793094
Target:  5'- gUCGG-GCGCCGgCGcGGUgG-CGCGCu -3'
miRNA:   3'- -AGCUaUGCGGUgGCuUCAgCaGCGCG- -5'
18938 3' -54 NC_004683.1 + 24343 0.67 0.793094
Target:  5'- -aGAUGCaaCGCCGAc-UCGUCGcCGCa -3'
miRNA:   3'- agCUAUGcgGUGGCUucAGCAGC-GCG- -5'
18938 3' -54 NC_004683.1 + 39759 0.67 0.793094
Target:  5'- aUCGuaugGCGCgACUGuGGUUGUCGaGCg -3'
miRNA:   3'- -AGCua--UGCGgUGGCuUCAGCAGCgCG- -5'
18938 3' -54 NC_004683.1 + 51555 0.67 0.793094
Target:  5'- gUCGuaGUACGCCugC-AAGcCGUCGaGCa -3'
miRNA:   3'- -AGC--UAUGCGGugGcUUCaGCAGCgCG- -5'
18938 3' -54 NC_004683.1 + 37845 0.67 0.793094
Target:  5'- gUGAcGCgGCCGCCuGGGuGUCGUCgGCGUg -3'
miRNA:   3'- aGCUaUG-CGGUGG-CUU-CAGCAG-CGCG- -5'
18938 3' -54 NC_004683.1 + 37067 0.67 0.793094
Target:  5'- aCGAuuUACGCCgagacGCCGA-GUC--CGCGCa -3'
miRNA:   3'- aGCU--AUGCGG-----UGGCUuCAGcaGCGCG- -5'
18938 3' -54 NC_004683.1 + 51618 0.67 0.792126
Target:  5'- gCGGcGCGCCuGCCGugcgugauggaucAGGUCGccgaugccgaUCGCGCg -3'
miRNA:   3'- aGCUaUGCGG-UGGC-------------UUCAGC----------AGCGCG- -5'
18938 3' -54 NC_004683.1 + 43071 0.67 0.787263
Target:  5'- cCGAUcuuCGCCaauccugacggcgagGCCGAGGUCG-CGCuGUa -3'
miRNA:   3'- aGCUAu--GCGG---------------UGGCUUCAGCaGCG-CG- -5'
18938 3' -54 NC_004683.1 + 16885 0.67 0.783344
Target:  5'- gCGAggacuCGCCGCUGG---UGUCGUGCa -3'
miRNA:   3'- aGCUau---GCGGUGGCUucaGCAGCGCG- -5'
18938 3' -54 NC_004683.1 + 33365 0.67 0.783344
Target:  5'- cUCGGUGggguacCGUCugCGAAGgCGuUUGCGCu -3'
miRNA:   3'- -AGCUAU------GCGGugGCUUCaGC-AGCGCG- -5'
18938 3' -54 NC_004683.1 + 19077 0.67 0.783344
Target:  5'- aCGA--CGCCACCGA---CGgCGCGCc -3'
miRNA:   3'- aGCUauGCGGUGGCUucaGCaGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.