miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18938 5' -67.2 NC_004683.1 + 52721 0.66 0.230925
Target:  5'- uCGGCGCGUUccucgucggugaACaCGUGCUGGCacgGCCCGc -3'
miRNA:   3'- -GUCGCGCGG------------UG-GCGCGGCCG---CGGGCu -5'
18938 5' -67.2 NC_004683.1 + 25655 0.66 0.230925
Target:  5'- -uGCGacgGCCGCCGUGCCGuuGCCg-- -3'
miRNA:   3'- guCGCg--CGGUGGCGCGGCcgCGGgcu -5'
18938 5' -67.2 NC_004683.1 + 12358 0.66 0.230925
Target:  5'- uCGGCGCGUauCCGCguGCUGGaGCUCGAa -3'
miRNA:   3'- -GUCGCGCGguGGCG--CGGCCgCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 7311 0.66 0.230925
Target:  5'- uCAcCGCGCCcccaACCGCGgCGGUGCUgGc -3'
miRNA:   3'- -GUcGCGCGG----UGGCGCgGCCGCGGgCu -5'
18938 5' -67.2 NC_004683.1 + 26346 0.66 0.230925
Target:  5'- gCGGUGCGagGCCGCGuuGGCccuCCgCGAc -3'
miRNA:   3'- -GUCGCGCggUGGCGCggCCGc--GG-GCU- -5'
18938 5' -67.2 NC_004683.1 + 399 0.66 0.229256
Target:  5'- gCAGCGC-CUGCUG-GCCGagaaccgucuccauGCGCCCGGc -3'
miRNA:   3'- -GUCGCGcGGUGGCgCGGC--------------CGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 1024 0.66 0.225402
Target:  5'- -uGCGCGCCuugaagaucaCGCGCUGGCcaUCCGGg -3'
miRNA:   3'- guCGCGCGGug--------GCGCGGCCGc-GGGCU- -5'
18938 5' -67.2 NC_004683.1 + 13150 0.66 0.225402
Target:  5'- uGGCGUGCCACCG-GCagCGuCGCCUGc -3'
miRNA:   3'- gUCGCGCGGUGGCgCG--GCcGCGGGCu -5'
18938 5' -67.2 NC_004683.1 + 24256 0.66 0.222142
Target:  5'- gGGCccGCGCCuacgccgaguccuacGCCGCGCUcauGG-GCCCGGu -3'
miRNA:   3'- gUCG--CGCGG---------------UGGCGCGG---CCgCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 4983 0.66 0.219991
Target:  5'- gCAGgGCGCCguggcgacuacgACCGCGacgccaucCUGGaGCCCGAc -3'
miRNA:   3'- -GUCgCGCGG------------UGGCGC--------GGCCgCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 8536 0.66 0.219991
Target:  5'- gCAGgGCgGCCACCGCaCCGGCcugaucGCCgUGGc -3'
miRNA:   3'- -GUCgCG-CGGUGGCGcGGCCG------CGG-GCU- -5'
18938 5' -67.2 NC_004683.1 + 20471 0.66 0.219991
Target:  5'- gGGUGCGCCGCCaGCuGCCaGUGCagaucccucgCCGGc -3'
miRNA:   3'- gUCGCGCGGUGG-CG-CGGcCGCG----------GGCU- -5'
18938 5' -67.2 NC_004683.1 + 6475 0.66 0.219456
Target:  5'- cCAGCGuCGaggaCGCCaGCGCCGagccgggucaccuGCGCUCGGu -3'
miRNA:   3'- -GUCGC-GCg---GUGG-CGCGGC-------------CGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 21904 0.66 0.216798
Target:  5'- gAGCGgGCUGCUgguGCGUCGGgcaaucccggcaaucCGCCCGGc -3'
miRNA:   3'- gUCGCgCGGUGG---CGCGGCC---------------GCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 40523 0.66 0.214692
Target:  5'- gCGGUGCauGCCACgG-GCgGGUGCCCa- -3'
miRNA:   3'- -GUCGCG--CGGUGgCgCGgCCGCGGGcu -5'
18938 5' -67.2 NC_004683.1 + 45582 0.66 0.214692
Target:  5'- aGGCGCucguugacgGCCuggucgacGCCGgGgUGGUGCCCGAc -3'
miRNA:   3'- gUCGCG---------CGG--------UGGCgCgGCCGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 54986 0.66 0.214692
Target:  5'- -cGCaGCGUCAUcgagCGCGUCGGCgGCCuCGAu -3'
miRNA:   3'- guCG-CGCGGUG----GCGCGGCCG-CGG-GCU- -5'
18938 5' -67.2 NC_004683.1 + 16095 0.66 0.214168
Target:  5'- -cGCgGCGUCAUCGUcgaaaccGCCGGCGUgCGGc -3'
miRNA:   3'- guCG-CGCGGUGGCG-------CGGCCGCGgGCU- -5'
18938 5' -67.2 NC_004683.1 + 41630 0.66 0.213123
Target:  5'- gGGCGCGCgGCgaacauggcacucuCGCaaUGGCGCUCGAg -3'
miRNA:   3'- gUCGCGCGgUG--------------GCGcgGCCGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 1662 0.66 0.209502
Target:  5'- uGGCGaCGUUGCCGcCGCgGGCcGCCgGGa -3'
miRNA:   3'- gUCGC-GCGGUGGC-GCGgCCG-CGGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.