miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18938 5' -67.2 NC_004683.1 + 44447 1.07 0.000128
Target:  5'- gCAGCGCGCCACCGCGCCGGCGCCCGAc -3'
miRNA:   3'- -GUCGCGCGGUGGCGCGGCCGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 26226 0.81 0.013938
Target:  5'- uCAGCGaGaCCGCCGCGCCGGCGauaCCCGAu -3'
miRNA:   3'- -GUCGCgC-GGUGGCGCGGCCGC---GGGCU- -5'
18938 5' -67.2 NC_004683.1 + 4882 0.79 0.019901
Target:  5'- gAGCGCGCCGCCGaacugGCCcGCGUCCGAu -3'
miRNA:   3'- gUCGCGCGGUGGCg----CGGcCGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 24707 0.79 0.02102
Target:  5'- -cGCGCGCCGCCGCGaCCGcaaCGCCCGc -3'
miRNA:   3'- guCGCGCGGUGGCGC-GGCc--GCGGGCu -5'
18938 5' -67.2 NC_004683.1 + 5238 0.77 0.029967
Target:  5'- gCGGCGCGCaCGuuGuCGCUGGCGCCCu- -3'
miRNA:   3'- -GUCGCGCG-GUggC-GCGGCCGCGGGcu -5'
18938 5' -67.2 NC_004683.1 + 42578 0.77 0.031557
Target:  5'- gAGCGCGCCGCgGCggucgggGCCGGuCGUCCGGc -3'
miRNA:   3'- gUCGCGCGGUGgCG-------CGGCC-GCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 5840 0.77 0.031643
Target:  5'- -cGCGCGgCACCGcCGCCaaGGCGCCUGGc -3'
miRNA:   3'- guCGCGCgGUGGC-GCGG--CCGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 9767 0.76 0.03433
Target:  5'- aCGGuCG-GCCACCGCGuuGGUGCCCa- -3'
miRNA:   3'- -GUC-GCgCGGUGGCGCggCCGCGGGcu -5'
18938 5' -67.2 NC_004683.1 + 39628 0.75 0.043807
Target:  5'- -uGgGCGCCGCCGgGgUGGCGaCCCGAg -3'
miRNA:   3'- guCgCGCGGUGGCgCgGCCGC-GGGCU- -5'
18938 5' -67.2 NC_004683.1 + 46391 0.75 0.047374
Target:  5'- gGGC-CGCUACCGCGCCcaguacguguaccGGUGCCCGu -3'
miRNA:   3'- gUCGcGCGGUGGCGCGG-------------CCGCGGGCu -5'
18938 5' -67.2 NC_004683.1 + 49490 0.74 0.050132
Target:  5'- cCGGUGCGCCGCUGC-CUGGCGggaucuuucucCCCGAg -3'
miRNA:   3'- -GUCGCGCGGUGGCGcGGCCGC-----------GGGCU- -5'
18938 5' -67.2 NC_004683.1 + 52330 0.74 0.050132
Target:  5'- -cGUGCGCCuugguGCCGCGCCGGC-CCgGGu -3'
miRNA:   3'- guCGCGCGG-----UGGCGCGGCCGcGGgCU- -5'
18938 5' -67.2 NC_004683.1 + 45754 0.74 0.052904
Target:  5'- cCAGCcacaGCGCCGauGUGCCGGCGgCCGGg -3'
miRNA:   3'- -GUCG----CGCGGUggCGCGGCCGCgGGCU- -5'
18938 5' -67.2 NC_004683.1 + 44513 0.74 0.055824
Target:  5'- uGGCGCGCUGCgCGCGuuGuGCGCgCGAc -3'
miRNA:   3'- gUCGCGCGGUG-GCGCggC-CGCGgGCU- -5'
18938 5' -67.2 NC_004683.1 + 1691 0.74 0.057342
Target:  5'- gCAGCGCgGCCGgCGCGCUGcUGCCUGAc -3'
miRNA:   3'- -GUCGCG-CGGUgGCGCGGCcGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 43823 0.73 0.058901
Target:  5'- cCGGUGCGCUgcugaccucgGCCGCGCuCGGUcucgaGCCCGGu -3'
miRNA:   3'- -GUCGCGCGG----------UGGCGCG-GCCG-----CGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 1767 0.73 0.0605
Target:  5'- gCAGCGCGCCgGCCGCGCUgcgaucgucgaGGC-CCCa- -3'
miRNA:   3'- -GUCGCGCGG-UGGCGCGG-----------CCGcGGGcu -5'
18938 5' -67.2 NC_004683.1 + 18402 0.73 0.0605
Target:  5'- aCAGCGUGUCAUCGguUGCCGauGCGCCCGu -3'
miRNA:   3'- -GUCGCGCGGUGGC--GCGGC--CGCGGGCu -5'
18938 5' -67.2 NC_004683.1 + 18285 0.73 0.063825
Target:  5'- aCAGCGCGUCguGCUGCaGUCGG-GCCCGGa -3'
miRNA:   3'- -GUCGCGCGG--UGGCG-CGGCCgCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 51179 0.72 0.076909
Target:  5'- cCGGCGCGCCGCCgagaacGCGCCccgcacgagcgcGaGCGCCCc- -3'
miRNA:   3'- -GUCGCGCGGUGG------CGCGG------------C-CGCGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.