miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18938 5' -67.2 NC_004683.1 + 12242 0.7 0.100122
Target:  5'- gAGCGC-CCGgCGUGCCGaUGCCCGGc -3'
miRNA:   3'- gUCGCGcGGUgGCGCGGCcGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 51179 0.72 0.076909
Target:  5'- cCGGCGCGCCGCCgagaacGCGCCccgcacgagcgcGaGCGCCCc- -3'
miRNA:   3'- -GUCGCGCGGUGG------CGCGG------------C-CGCGGGcu -5'
18938 5' -67.2 NC_004683.1 + 6676 0.71 0.085276
Target:  5'- gCGGCGCGCCGCUGgugugGCUGGCacgugucGCCCGu -3'
miRNA:   3'- -GUCGCGCGGUGGCg----CGGCCG-------CGGGCu -5'
18938 5' -67.2 NC_004683.1 + 27200 0.71 0.087789
Target:  5'- gCGGCGaUGaCUGCCGCGCUGGCGCgucucgaugccgCCGAg -3'
miRNA:   3'- -GUCGC-GC-GGUGGCGCGGCCGCG------------GGCU- -5'
18938 5' -67.2 NC_004683.1 + 21333 0.71 0.090134
Target:  5'- gGGCGCGgauagCACCGCGgUGGUGCCCc- -3'
miRNA:   3'- gUCGCGCg----GUGGCGCgGCCGCGGGcu -5'
18938 5' -67.2 NC_004683.1 + 41245 0.71 0.092538
Target:  5'- -cGUGCGCCugCGUgacuggcuGUgGGCGCCCGu -3'
miRNA:   3'- guCGCGCGGugGCG--------CGgCCGCGGGCu -5'
18938 5' -67.2 NC_004683.1 + 51871 0.71 0.092538
Target:  5'- gAGCuGCaCCACCGCGCgauccgugaUGGCGCCgGAa -3'
miRNA:   3'- gUCG-CGcGGUGGCGCG---------GCCGCGGgCU- -5'
18938 5' -67.2 NC_004683.1 + 11950 0.71 0.093517
Target:  5'- cCAGCGCGCCcgcgcggggcuACCGCccugcccacaccgggGCUGuCGCCCGAu -3'
miRNA:   3'- -GUCGCGCGG-----------UGGCG---------------CGGCcGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 2138 0.7 0.100122
Target:  5'- uGGCggGCGUgGCCGUGCUGGCggGCCUGGg -3'
miRNA:   3'- gUCG--CGCGgUGGCGCGGCCG--CGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 20438 0.72 0.076909
Target:  5'- gCGGUGCagggGCCACCGCGCCGaUGgCCGGc -3'
miRNA:   3'- -GUCGCG----CGGUGGCGCGGCcGCgGGCU- -5'
18938 5' -67.2 NC_004683.1 + 18285 0.73 0.063825
Target:  5'- aCAGCGCGUCguGCUGCaGUCGG-GCCCGGa -3'
miRNA:   3'- -GUCGCGCGG--UGGCG-CGGCCgCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 43823 0.73 0.058901
Target:  5'- cCGGUGCGCUgcugaccucgGCCGCGCuCGGUcucgaGCCCGGu -3'
miRNA:   3'- -GUCGCGCGG----------UGGCGCG-GCCG-----CGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 4882 0.79 0.019901
Target:  5'- gAGCGCGCCGCCGaacugGCCcGCGUCCGAu -3'
miRNA:   3'- gUCGCGCGGUGGCg----CGGcCGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 24707 0.79 0.02102
Target:  5'- -cGCGCGCCGCCGCGaCCGcaaCGCCCGc -3'
miRNA:   3'- guCGCGCGGUGGCGC-GGCc--GCGGGCu -5'
18938 5' -67.2 NC_004683.1 + 42578 0.77 0.031557
Target:  5'- gAGCGCGCCGCgGCggucgggGCCGGuCGUCCGGc -3'
miRNA:   3'- gUCGCGCGGUGgCG-------CGGCC-GCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 5840 0.77 0.031643
Target:  5'- -cGCGCGgCACCGcCGCCaaGGCGCCUGGc -3'
miRNA:   3'- guCGCGCgGUGGC-GCGG--CCGCGGGCU- -5'
18938 5' -67.2 NC_004683.1 + 39628 0.75 0.043807
Target:  5'- -uGgGCGCCGCCGgGgUGGCGaCCCGAg -3'
miRNA:   3'- guCgCGCGGUGGCgCgGCCGC-GGGCU- -5'
18938 5' -67.2 NC_004683.1 + 46391 0.75 0.047374
Target:  5'- gGGC-CGCUACCGCGCCcaguacguguaccGGUGCCCGu -3'
miRNA:   3'- gUCGcGCGGUGGCGCGG-------------CCGCGGGCu -5'
18938 5' -67.2 NC_004683.1 + 49490 0.74 0.050132
Target:  5'- cCGGUGCGCCGCUGC-CUGGCGggaucuuucucCCCGAg -3'
miRNA:   3'- -GUCGCGCGGUGGCGcGGCCGC-----------GGGCU- -5'
18938 5' -67.2 NC_004683.1 + 1691 0.74 0.057342
Target:  5'- gCAGCGCgGCCGgCGCGCUGcUGCCUGAc -3'
miRNA:   3'- -GUCGCG-CGGUgGCGCGGCcGCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.