miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18939 3' -58.4 NC_004683.1 + 53206 0.65 0.625575
Target:  5'- gCGCGCaCGCCGugagcacgacgaguuCCUgacCGCGUacugcgagaagcgacUCGACGAa -3'
miRNA:   3'- -GCGCG-GCGGCu--------------GGA---GUGCA---------------AGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 52493 0.66 0.620281
Target:  5'- gCGCGCUgGCuCGGCaagCACGUgcaGGCGAu -3'
miRNA:   3'- -GCGCGG-CG-GCUGga-GUGCAag-CUGCU- -5'
18939 3' -58.4 NC_004683.1 + 18123 0.66 0.620281
Target:  5'- gGuCGCCGCCGGCaccuaccgCACGccgUGGCGGc -3'
miRNA:   3'- gC-GCGGCGGCUGga------GUGCaa-GCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 44939 0.66 0.620281
Target:  5'- aGCGCCuGCCGucgaaacccGgCUCACGaaaGACGAu -3'
miRNA:   3'- gCGCGG-CGGC---------UgGAGUGCaagCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 23796 0.66 0.620281
Target:  5'- gGUGCCGCCG-CCggugcCGCcg-CGGCGGa -3'
miRNA:   3'- gCGCGGCGGCuGGa----GUGcaaGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 25549 0.66 0.620281
Target:  5'- aGCGCCGCggUGGCCacCACGUagagguacUGACGAa -3'
miRNA:   3'- gCGCGGCG--GCUGGa-GUGCAa-------GCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 10132 0.66 0.609702
Target:  5'- aGuCGCCGCCGcgGCCgaACGgcUCGGCGGc -3'
miRNA:   3'- gC-GCGGCGGC--UGGagUGCa-AGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 24260 0.66 0.609702
Target:  5'- cCGCGCCuacGCCGaguccuacgccGCgCUCAUGggcccggUCGACGGc -3'
miRNA:   3'- -GCGCGG---CGGC-----------UG-GAGUGCa------AGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 11018 0.66 0.599141
Target:  5'- uCGCGCCaUCGagGCCcauUCGCGUUgCGAUGAg -3'
miRNA:   3'- -GCGCGGcGGC--UGG---AGUGCAA-GCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 45159 0.66 0.592817
Target:  5'- aCGgGCUgGCCGACCgCAgcgacguugcccgguCGUUCGGCGu -3'
miRNA:   3'- -GCgCGG-CGGCUGGaGU---------------GCAAGCUGCu -5'
18939 3' -58.4 NC_004683.1 + 10043 0.66 0.588607
Target:  5'- -aCGCCGCCGAgCCguucggcCGCGg-CGGCGAc -3'
miRNA:   3'- gcGCGGCGGCU-GGa------GUGCaaGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 22757 0.66 0.588607
Target:  5'- uGCaGCCGCCGACaUCACcgaGggCGGCa- -3'
miRNA:   3'- gCG-CGGCGGCUGgAGUG---CaaGCUGcu -5'
18939 3' -58.4 NC_004683.1 + 12828 0.66 0.588607
Target:  5'- gGCGCUGCUGGCCa-ACGUccCGGCa- -3'
miRNA:   3'- gCGCGGCGGCUGGagUGCAa-GCUGcu -5'
18939 3' -58.4 NC_004683.1 + 32713 0.66 0.578106
Target:  5'- uCGCGCCgGCUGGCC-CGCGacUUCGGa-- -3'
miRNA:   3'- -GCGCGG-CGGCUGGaGUGC--AAGCUgcu -5'
18939 3' -58.4 NC_004683.1 + 24358 0.66 0.578106
Target:  5'- uCGuCGCCGCaGGCCacgcggUCGCGaucaccggugucUUCGACGAg -3'
miRNA:   3'- -GC-GCGGCGgCUGG------AGUGC------------AAGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 21956 0.66 0.578106
Target:  5'- gGCgGCCGCCGAgUUCAcCGgccaGGCGGg -3'
miRNA:   3'- gCG-CGGCGGCUgGAGU-GCaag-CUGCU- -5'
18939 3' -58.4 NC_004683.1 + 51554 0.66 0.573917
Target:  5'- gCGCGCCGCCaGCg-CACGcagaacgagggccUCGACGGg -3'
miRNA:   3'- -GCGCGGCGGcUGgaGUGCa------------AGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 24440 0.66 0.567646
Target:  5'- uCGCGaCCGCgUGGCCU-GCGg-CGACGAg -3'
miRNA:   3'- -GCGC-GGCG-GCUGGAgUGCaaGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 33673 0.67 0.557235
Target:  5'- uGgGUCGCCcACCagUCGCGUUCGAgGu -3'
miRNA:   3'- gCgCGGCGGcUGG--AGUGCAAGCUgCu -5'
18939 3' -58.4 NC_004683.1 + 25644 0.67 0.557235
Target:  5'- cCGUGCCguuGCCGACC--GCGgccagggCGGCGAc -3'
miRNA:   3'- -GCGCGG---CGGCUGGagUGCaa-----GCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.