miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18939 3' -58.4 NC_004683.1 + 52321 0.68 0.47645
Target:  5'- gGCGCUcaaggacgGCCGAuuCCg-GCGUUCGGCGGu -3'
miRNA:   3'- gCGCGG--------CGGCU--GGagUGCAAGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 19378 0.69 0.410816
Target:  5'- gGUGcCCGCCGACgucaCUCACGUcgcgaUCGGCu- -3'
miRNA:   3'- gCGC-GGCGGCUG----GAGUGCA-----AGCUGcu -5'
18939 3' -58.4 NC_004683.1 + 23907 0.69 0.419849
Target:  5'- aGCGCCGCguaGGCgUgGCGgcCGACGGc -3'
miRNA:   3'- gCGCGGCGg--CUGgAgUGCaaGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 17808 0.69 0.429002
Target:  5'- uGaCGCCGCUGGCg-CACGg-CGACGAa -3'
miRNA:   3'- gC-GCGGCGGCUGgaGUGCaaGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 46921 0.69 0.429002
Target:  5'- gGCGCUGCCGACgUgCACGacgGugGAg -3'
miRNA:   3'- gCGCGGCGGCUGgA-GUGCaagCugCU- -5'
18939 3' -58.4 NC_004683.1 + 50519 0.69 0.429002
Target:  5'- aCGCGCgGCUggugcuaaagGGCCUCGaguCGUaugUCGACGAc -3'
miRNA:   3'- -GCGCGgCGG----------CUGGAGU---GCA---AGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 6679 0.69 0.435478
Target:  5'- gCGCGCCGCUgguguGGCUggCACGUgucgcccgugaucaUCGAUGAc -3'
miRNA:   3'- -GCGCGGCGG-----CUGGa-GUGCA--------------AGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 44343 0.68 0.466747
Target:  5'- gCGCuGCCGUCGACCgUCAagc-CGACGGc -3'
miRNA:   3'- -GCG-CGGCGGCUGG-AGUgcaaGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 38678 0.68 0.47645
Target:  5'- uGCGCuCGCUGGCC--GCG-UCGACGu -3'
miRNA:   3'- gCGCG-GCGGCUGGagUGCaAGCUGCu -5'
18939 3' -58.4 NC_004683.1 + 1703 0.7 0.375073
Target:  5'- gCGCGCUGCUgccuGACCUCAagaagcucggcuuCGaggUCGGCGAc -3'
miRNA:   3'- -GCGCGGCGG----CUGGAGU-------------GCa--AGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 51182 0.7 0.351093
Target:  5'- gCGCGCCGCCGAgaacgcgccCCgCACGagCG-CGAg -3'
miRNA:   3'- -GCGCGGCGGCU---------GGaGUGCaaGCuGCU- -5'
18939 3' -58.4 NC_004683.1 + 12645 0.7 0.351093
Target:  5'- gGCGCCGCUgcugGGCC-CGCugUCGGCGAu -3'
miRNA:   3'- gCGCGGCGG----CUGGaGUGcaAGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 56017 0.75 0.171107
Target:  5'- -cCGCCGCCGACUUCGucucCG-UCGACGAc -3'
miRNA:   3'- gcGCGGCGGCUGGAGU----GCaAGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 24708 0.75 0.175637
Target:  5'- gCGCGCCGCCGcgaccgcaacGCC-CGCG-UCGACGu -3'
miRNA:   3'- -GCGCGGCGGC----------UGGaGUGCaAGCUGCu -5'
18939 3' -58.4 NC_004683.1 + 4884 0.75 0.194842
Target:  5'- gCGCGCCGCCGaacugGCC-CGCGUcCGAuCGAc -3'
miRNA:   3'- -GCGCGGCGGC-----UGGaGUGCAaGCU-GCU- -5'
18939 3' -58.4 NC_004683.1 + 43827 0.72 0.263718
Target:  5'- uGCGCUGCUGACCUCggccGCGcUCGGucuCGAg -3'
miRNA:   3'- gCGCGGCGGCUGGAG----UGCaAGCU---GCU- -5'
18939 3' -58.4 NC_004683.1 + 51498 0.72 0.276956
Target:  5'- aCGCGCCcaCCGACCgCGCGaUCGGCa- -3'
miRNA:   3'- -GCGCGGc-GGCUGGaGUGCaAGCUGcu -5'
18939 3' -58.4 NC_004683.1 + 6379 0.72 0.290719
Target:  5'- uGCGCC-CCGGCgaCcUGUUCGACGAc -3'
miRNA:   3'- gCGCGGcGGCUGgaGuGCAAGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 55000 0.72 0.290719
Target:  5'- gCGCGUCGgCGGCCUCGauccCGcaUUCGGCGGc -3'
miRNA:   3'- -GCGCGGCgGCUGGAGU----GC--AAGCUGCU- -5'
18939 3' -58.4 NC_004683.1 + 5174 0.7 0.350286
Target:  5'- gCGCGCCGCCGccACCaagaucaUCgaGCGcUUCGAUGAc -3'
miRNA:   3'- -GCGCGGCGGC--UGG-------AG--UGC-AAGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.