miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18939 5' -54 NC_004683.1 + 10767 0.66 0.803103
Target:  5'- -uUCGUCGGCggGUUCG-CaGGCUCGu -3'
miRNA:   3'- acAGUAGCUGuaCAAGCuGcCCGGGU- -5'
18939 5' -54 NC_004683.1 + 31935 0.66 0.803103
Target:  5'- aGUCAUCGGCGg--UCG-CuGGCCUg -3'
miRNA:   3'- aCAGUAGCUGUacaAGCuGcCCGGGu -5'
18939 5' -54 NC_004683.1 + 20144 0.66 0.799243
Target:  5'- cGUCAaucccugacacggUGGCGUGcaCGAuCGGGCCCGc -3'
miRNA:   3'- aCAGUa------------GCUGUACaaGCU-GCCCGGGU- -5'
18939 5' -54 NC_004683.1 + 11163 0.66 0.772487
Target:  5'- ----cUCGugGUGUUCgcaacuucgugaaGACGGGCCUg -3'
miRNA:   3'- acaguAGCugUACAAG-------------CUGCCCGGGu -5'
18939 5' -54 NC_004683.1 + 25174 0.67 0.732018
Target:  5'- gGUCAUCGGCGg---CGugcuCGGGgCCAa -3'
miRNA:   3'- aCAGUAGCUGUacaaGCu---GCCCgGGU- -5'
18939 5' -54 NC_004683.1 + 29631 0.67 0.721367
Target:  5'- cGUUGUCGAC---UUCGACGGauacgaGCCCGa -3'
miRNA:   3'- aCAGUAGCUGuacAAGCUGCC------CGGGU- -5'
18939 5' -54 NC_004683.1 + 33476 0.67 0.710626
Target:  5'- --aCGUCGGCGUGgUCGACGGGa--- -3'
miRNA:   3'- acaGUAGCUGUACaAGCUGCCCgggu -5'
18939 5' -54 NC_004683.1 + 6715 0.68 0.699808
Target:  5'- -aUCAUCGAugacguCAUGgaagUCGACGG-CCCGg -3'
miRNA:   3'- acAGUAGCU------GUACa---AGCUGCCcGGGU- -5'
18939 5' -54 NC_004683.1 + 46346 0.68 0.696549
Target:  5'- gGUCcgCGugAUGcagUCGuggaagcugccggaGCGGGCCCc -3'
miRNA:   3'- aCAGuaGCugUACa--AGC--------------UGCCCGGGu -5'
18939 5' -54 NC_004683.1 + 49113 0.68 0.666999
Target:  5'- cGUCGUCGACuUGgUCGACGugcaucagucGGCgCCGu -3'
miRNA:   3'- aCAGUAGCUGuACaAGCUGC----------CCG-GGU- -5'
18939 5' -54 NC_004683.1 + 41034 0.68 0.655983
Target:  5'- ---gGUCGGCGUGgcCGACGGGCa-- -3'
miRNA:   3'- acagUAGCUGUACaaGCUGCCCGggu -5'
18939 5' -54 NC_004683.1 + 46502 0.68 0.655983
Target:  5'- gGUUG-CGGCAcGUggUCGACGGGCaCCGg -3'
miRNA:   3'- aCAGUaGCUGUaCA--AGCUGCCCG-GGU- -5'
18939 5' -54 NC_004683.1 + 8166 0.69 0.644944
Target:  5'- gGUCGUCGGCGccgUCGAgCGGGUCa- -3'
miRNA:   3'- aCAGUAGCUGUacaAGCU-GCCCGGgu -5'
18939 5' -54 NC_004683.1 + 17178 0.69 0.644944
Target:  5'- --cCGUCGAgCAgGUUCGACGGGaugCCAg -3'
miRNA:   3'- acaGUAGCU-GUaCAAGCUGCCCg--GGU- -5'
18939 5' -54 NC_004683.1 + 49086 0.69 0.633893
Target:  5'- gGUCGggcuugagggCGGCGggaucgCGGCGGGCCCGc -3'
miRNA:   3'- aCAGUa---------GCUGUacaa--GCUGCCCGGGU- -5'
18939 5' -54 NC_004683.1 + 46717 0.69 0.633893
Target:  5'- cGUCAuggugcgggUCGGC-UGaUCGACGGGCgCGg -3'
miRNA:   3'- aCAGU---------AGCUGuACaAGCUGCCCGgGU- -5'
18939 5' -54 NC_004683.1 + 44806 0.69 0.633893
Target:  5'- uUGUCGgccUCGGCGUaGUgguacgUCGGCGGGCgCGu -3'
miRNA:   3'- -ACAGU---AGCUGUA-CA------AGCUGCCCGgGU- -5'
18939 5' -54 NC_004683.1 + 22129 0.7 0.589771
Target:  5'- cGUCAaaGGgGUGaagUUGGCGGGCCCc -3'
miRNA:   3'- aCAGUagCUgUACa--AGCUGCCCGGGu -5'
18939 5' -54 NC_004683.1 + 19667 0.7 0.578808
Target:  5'- aUGUCAUCGAgCAaGUUgccCGACGGguugauGCCCAa -3'
miRNA:   3'- -ACAGUAGCU-GUaCAA---GCUGCC------CGGGU- -5'
18939 5' -54 NC_004683.1 + 50620 0.7 0.557023
Target:  5'- uUGUCGUCGACAUa--CGACucgaGGCCCu -3'
miRNA:   3'- -ACAGUAGCUGUAcaaGCUGc---CCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.