miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1894 3' -51.5 NC_001347.2 + 94090 0.66 0.998583
Target:  5'- cGCGGAcUG-CGcCGggGGgCGGCgGGc -3'
miRNA:   3'- -CGUCUuACuGCaGCuuUCgGUCGgCC- -5'
1894 3' -51.5 NC_001347.2 + 120081 0.66 0.998583
Target:  5'- cGUGGAA-GGCGgcucgcUGGAAGCCGGUCGu -3'
miRNA:   3'- -CGUCUUaCUGCa-----GCUUUCGGUCGGCc -5'
1894 3' -51.5 NC_001347.2 + 228978 0.66 0.998306
Target:  5'- cGCGcGggUGACGcCGcgcAGCCAGaugaaCGGc -3'
miRNA:   3'- -CGU-CuuACUGCaGCuu-UCGGUCg----GCC- -5'
1894 3' -51.5 NC_001347.2 + 230157 0.66 0.997984
Target:  5'- uCAGggUG-UGUCGcgGGCguguGCCGGg -3'
miRNA:   3'- cGUCuuACuGCAGCuuUCGgu--CGGCC- -5'
1894 3' -51.5 NC_001347.2 + 228073 0.66 0.997984
Target:  5'- gGCGGGuccggcGGCGUCGggGaccgugccgcgcGCCAuGCUGGu -3'
miRNA:   3'- -CGUCUua----CUGCAGCuuU------------CGGU-CGGCC- -5'
1894 3' -51.5 NC_001347.2 + 678 0.66 0.997984
Target:  5'- uCAGggUG-UGUCGcgGGCguguGCCGGg -3'
miRNA:   3'- cGUCuuACuGCAGCuuUCGgu--CGGCC- -5'
1894 3' -51.5 NC_001347.2 + 120183 0.66 0.997984
Target:  5'- cGguGAggGAcccuCGUCGGAAGC-GGCCGc -3'
miRNA:   3'- -CguCUuaCU----GCAGCUUUCGgUCGGCc -5'
1894 3' -51.5 NC_001347.2 + 229556 0.66 0.997984
Target:  5'- cGCGccGUGcACGUCGcugccuauaAAAGCCAGCUGc -3'
miRNA:   3'- -CGUcuUAC-UGCAGC---------UUUCGGUCGGCc -5'
1894 3' -51.5 NC_001347.2 + 163301 0.66 0.997949
Target:  5'- --cGAGUGGCGgacaugcggcugcUgGggGGCCAacGCCGGc -3'
miRNA:   3'- cguCUUACUGC-------------AgCuuUCGGU--CGGCC- -5'
1894 3' -51.5 NC_001347.2 + 21939 0.66 0.997612
Target:  5'- gGCAGAggGAgGUC-AGGGCCA-CCGa -3'
miRNA:   3'- -CGUCUuaCUgCAGcUUUCGGUcGGCc -5'
1894 3' -51.5 NC_001347.2 + 230246 0.66 0.997612
Target:  5'- --uGggUG-UGUCG-GGGCgCGGCCGGg -3'
miRNA:   3'- cguCuuACuGCAGCuUUCG-GUCGGCC- -5'
1894 3' -51.5 NC_001347.2 + 162121 0.66 0.997184
Target:  5'- cGCAGAagGGcCGUCGcGAGuCCcGCCGc -3'
miRNA:   3'- -CGUCUuaCU-GCAGCuUUC-GGuCGGCc -5'
1894 3' -51.5 NC_001347.2 + 121952 0.66 0.996695
Target:  5'- uGCAGAcgGguauccACGUaCGcguGAGCCAGCCc- -3'
miRNA:   3'- -CGUCUuaC------UGCA-GCu--UUCGGUCGGcc -5'
1894 3' -51.5 NC_001347.2 + 90771 0.66 0.996695
Target:  5'- uGCAGcuUGACGcCGAA-GCCGacgaggucucGCUGGa -3'
miRNA:   3'- -CGUCuuACUGCaGCUUuCGGU----------CGGCC- -5'
1894 3' -51.5 NC_001347.2 + 45413 0.66 0.996695
Target:  5'- cGCAGuAGUGGCGcagcugggccgUGAAAaCCAGCUGGu -3'
miRNA:   3'- -CGUC-UUACUGCa----------GCUUUcGGUCGGCC- -5'
1894 3' -51.5 NC_001347.2 + 4383 0.66 0.996695
Target:  5'- -gGGAAcGG-GUCGgcGGCCGGUCGGc -3'
miRNA:   3'- cgUCUUaCUgCAGCuuUCGGUCGGCC- -5'
1894 3' -51.5 NC_001347.2 + 73475 0.66 0.996695
Target:  5'- gGCGGGccagGACGUCGGAGgguccgcgcGUCGGCCu- -3'
miRNA:   3'- -CGUCUua--CUGCAGCUUU---------CGGUCGGcc -5'
1894 3' -51.5 NC_001347.2 + 222392 0.67 0.996138
Target:  5'- aGguGGucaGUGGCGgCGAcaAGGCCgccugAGCCGGu -3'
miRNA:   3'- -CguCU---UACUGCaGCU--UUCGG-----UCGGCC- -5'
1894 3' -51.5 NC_001347.2 + 41691 0.67 0.995506
Target:  5'- cGCAG-GUGACc---AAGGCCAGcCCGGg -3'
miRNA:   3'- -CGUCuUACUGcagcUUUCGGUC-GGCC- -5'
1894 3' -51.5 NC_001347.2 + 222096 0.67 0.995506
Target:  5'- aCGGggUGG-GaCGAGAGCCGGuaGGa -3'
miRNA:   3'- cGUCuuACUgCaGCUUUCGGUCggCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.