miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1894 5' -61.5 NC_001347.2 + 84003 0.66 0.749784
Target:  5'- cAGCCGCGUUauAGGa--GGCACGGUUUu -3'
miRNA:   3'- -UCGGCGCAAc-UCCgggUCGUGCCGAA- -5'
1894 5' -61.5 NC_001347.2 + 155568 0.66 0.740505
Target:  5'- uGGCCGUGcgcgaagUGAGGCCgUAGUccACGGUg- -3'
miRNA:   3'- -UCGGCGCa------ACUCCGG-GUCG--UGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 124296 0.66 0.73114
Target:  5'- cGGCCGCagcacgUGucGCCCGacgacgagaucGCGCGGCUg -3'
miRNA:   3'- -UCGGCGca----ACucCGGGU-----------CGUGCCGAa -5'
1894 5' -61.5 NC_001347.2 + 130179 0.66 0.721695
Target:  5'- aAGUCGCGUguAGcGUCCAacgcGCACGGCg- -3'
miRNA:   3'- -UCGGCGCAacUC-CGGGU----CGUGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 56310 0.66 0.712181
Target:  5'- gGGCCGCGUgccUGGGaacGCgC-GCACGGCg- -3'
miRNA:   3'- -UCGGCGCA---ACUC---CGgGuCGUGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 204640 0.66 0.712181
Target:  5'- cGGCCGCGUUGuucaccuuacuGGCCUuucucagcuGCACcGGCg- -3'
miRNA:   3'- -UCGGCGCAACu----------CCGGGu--------CGUG-CCGaa -5'
1894 5' -61.5 NC_001347.2 + 224671 0.66 0.702604
Target:  5'- aGGcCCGCGagaAGGCCC-GCACGGUc- -3'
miRNA:   3'- -UC-GGCGCaacUCCGGGuCGUGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 38095 0.66 0.696831
Target:  5'- cGGCCGCGgcGcGGGCUCGGCgucccgccguccgagACGGUg- -3'
miRNA:   3'- -UCGGCGCaaC-UCCGGGUCG---------------UGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 32174 0.66 0.692972
Target:  5'- cGUCGCGUUGAGGauagucGCGCGGUg- -3'
miRNA:   3'- uCGGCGCAACUCCgggu--CGUGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 206610 0.67 0.673577
Target:  5'- cAGCUGCGUcacGGGUCUAGC-CGGCc- -3'
miRNA:   3'- -UCGGCGCAac-UCCGGGUCGuGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 142962 0.67 0.66383
Target:  5'- gGGCuCGC--UGAGGCUguaaucgcaCAGCGCGGCg- -3'
miRNA:   3'- -UCG-GCGcaACUCCGG---------GUCGUGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 81314 0.67 0.654059
Target:  5'- uGuuGCGUUucuucGGGGCCaCAGaaCACGGCUa -3'
miRNA:   3'- uCggCGCAA-----CUCCGG-GUC--GUGCCGAa -5'
1894 5' -61.5 NC_001347.2 + 190787 0.67 0.654059
Target:  5'- cGGCCGCGaccaaGGGGCggggGGCGCGGCg- -3'
miRNA:   3'- -UCGGCGCaa---CUCCGgg--UCGUGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 227890 0.67 0.644271
Target:  5'- cGCCGCc--GAGGCC--GCGCGGCg- -3'
miRNA:   3'- uCGGCGcaaCUCCGGguCGUGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 47777 0.67 0.644271
Target:  5'- aAGCCGCGUc--GGUCaCAGgACGGCg- -3'
miRNA:   3'- -UCGGCGCAacuCCGG-GUCgUGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 192351 0.67 0.644271
Target:  5'- cGGCgCGCGggUGcAGGugcagcgcguCCCAGCGCGGCc- -3'
miRNA:   3'- -UCG-GCGCa-AC-UCC----------GGGUCGUGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 151627 0.67 0.634476
Target:  5'- uGcCCGUGUUgGAGGCCguGCGCaaGGCg- -3'
miRNA:   3'- uC-GGCGCAA-CUCCGGguCGUG--CCGaa -5'
1894 5' -61.5 NC_001347.2 + 129038 0.68 0.624678
Target:  5'- uGCCGCG-UGuGGCCagCGGCGcCGGUUUg -3'
miRNA:   3'- uCGGCGCaACuCCGG--GUCGU-GCCGAA- -5'
1894 5' -61.5 NC_001347.2 + 142243 0.68 0.595343
Target:  5'- cGGCUGCGgaaUGcGGCCCGGgcccgaugcCACGGCg- -3'
miRNA:   3'- -UCGGCGCa--ACuCCGGGUC---------GUGCCGaa -5'
1894 5' -61.5 NC_001347.2 + 153656 0.68 0.575899
Target:  5'- cGGCCGCGgcgGAGGCCgaa-GCGGCc- -3'
miRNA:   3'- -UCGGCGCaa-CUCCGGgucgUGCCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.