miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18940 3' -60.8 NC_004683.1 + 15169 0.72 0.197283
Target:  5'- cUUGCGCAccgaUGCUGgGGUGGCCUGGg -3'
miRNA:   3'- -AGCGCGUua--GCGGCaCCACCGGGCCg -5'
18940 3' -60.8 NC_004683.1 + 18175 0.69 0.315279
Target:  5'- aUCGUGCcgaucugauaGGUgGCCGUGGU-GCCCgccggGGCg -3'
miRNA:   3'- -AGCGCG----------UUAgCGGCACCAcCGGG-----CCG- -5'
18940 3' -60.8 NC_004683.1 + 18189 0.66 0.469708
Target:  5'- cUCGuCGCcggacAUCGCCGUagacaucGUcGCCCGGCu -3'
miRNA:   3'- -AGC-GCGu----UAGCGGCAc------CAcCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 18630 0.68 0.346056
Target:  5'- gUCGUGC--UgGCCcUGGUGggguucuucguGCCCGGCg -3'
miRNA:   3'- -AGCGCGuuAgCGGcACCAC-----------CGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 20078 0.74 0.148153
Target:  5'- uUCGCaCAGUCGa--UGGUGGCCuCGGCg -3'
miRNA:   3'- -AGCGcGUUAGCggcACCACCGG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 20528 0.68 0.354079
Target:  5'- cUCGCcgGCcAUCGgCGcGGUGGCCCcuGCa -3'
miRNA:   3'- -AGCG--CGuUAGCgGCaCCACCGGGc-CG- -5'
18940 3' -60.8 NC_004683.1 + 21682 0.71 0.218419
Target:  5'- gCGCGCAucaucaccgggGUgGUCGgugcgGGUGGCgCUGGCa -3'
miRNA:   3'- aGCGCGU-----------UAgCGGCa----CCACCG-GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 21871 0.66 0.473571
Target:  5'- aCGcCGCccGUgGCCGUacccgaccaaccaucGGUGGCCgCGGUc -3'
miRNA:   3'- aGC-GCGu-UAgCGGCA---------------CCACCGG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 21921 0.67 0.413828
Target:  5'- gUCGgGCAAUC-CCGgcaauccGCCCGGCg -3'
miRNA:   3'- -AGCgCGUUAGcGGCaccac--CGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 22658 0.69 0.307915
Target:  5'- aCGCGCGugCGCCGaGGUGaucaccgcGCuuGGCa -3'
miRNA:   3'- aGCGCGUuaGCGGCaCCAC--------CGggCCG- -5'
18940 3' -60.8 NC_004683.1 + 23704 0.68 0.346056
Target:  5'- cUCGaCGUuc-CGCCGcGGcGGCaCCGGCg -3'
miRNA:   3'- -AGC-GCGuuaGCGGCaCCaCCG-GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 24482 0.69 0.307186
Target:  5'- -aGcCGaCGAUCGCCGcGGUGGCCucgucgaagacacCGGUg -3'
miRNA:   3'- agC-GC-GUUAGCGGCaCCACCGG-------------GCCG- -5'
18940 3' -60.8 NC_004683.1 + 25058 0.7 0.272407
Target:  5'- aUCGUGCccgCGCUGcugaaccUGGUGGCCCcguuccucaguGGCg -3'
miRNA:   3'- -AGCGCGuuaGCGGC-------ACCACCGGG-----------CCG- -5'
18940 3' -60.8 NC_004683.1 + 25386 0.69 0.285925
Target:  5'- uUUGgGCAGgugguacUCGCUGUGcGccugcaGGCCCGGCa -3'
miRNA:   3'- -AGCgCGUU-------AGCGGCAC-Ca-----CCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 25513 0.7 0.24146
Target:  5'- -gGCGUGGUugaagcugaCGCCGUGccgcuGUGGCUCGGCc -3'
miRNA:   3'- agCGCGUUA---------GCGGCAC-----CACCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 25647 0.69 0.286615
Target:  5'- cCGC-CGAUCGCgGUGGcGGUCCuGCc -3'
miRNA:   3'- aGCGcGUUAGCGgCACCaCCGGGcCG- -5'
18940 3' -60.8 NC_004683.1 + 26102 0.77 0.084107
Target:  5'- gUGCGCGAgugaaCG-CGUGG-GGCCCGGCg -3'
miRNA:   3'- aGCGCGUUa----GCgGCACCaCCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 26972 0.67 0.404918
Target:  5'- aCGCGUGAgCGCCGggcaGGccGGCCaccuCGGCa -3'
miRNA:   3'- aGCGCGUUaGCGGCa---CCa-CCGG----GCCG- -5'
18940 3' -60.8 NC_004683.1 + 33113 0.7 0.265842
Target:  5'- cUCGCGCAgugccgucacaagGUCGUCGaGGUGGCguUUGGUg -3'
miRNA:   3'- -AGCGCGU-------------UAGCGGCaCCACCG--GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 33666 0.66 0.45064
Target:  5'- -gGCuCAAUCGCC-UGGUGGagaCCgaGGCa -3'
miRNA:   3'- agCGcGUUAGCGGcACCACCg--GG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.