Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18940 | 3' | -60.8 | NC_004683.1 | + | 37441 | 0.7 | 0.27307 |
Target: 5'- cUGUGCuuGAUaCGCCGaUGGgucaacgGGCCUGGCu -3' miRNA: 3'- aGCGCG--UUA-GCGGC-ACCa------CCGGGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 37273 | 0.68 | 0.338164 |
Target: 5'- gCGCGCAAaCGCCGgauugucuuggugGGUgcggagcgauugcgcGGCgCGGCg -3' miRNA: 3'- aGCGCGUUaGCGGCa------------CCA---------------CCGgGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 35370 | 0.72 | 0.177492 |
Target: 5'- uUC-CGCAAUCGCCaaGGUGGCgacgaguCCGGUa -3' miRNA: 3'- -AGcGCGUUAGCGGcaCCACCG-------GGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 34049 | 0.68 | 0.346056 |
Target: 5'- cUCGCGCca-CGCUGcaggcccaUGauGUGGUCCGGCa -3' miRNA: 3'- -AGCGCGuuaGCGGC--------AC--CACCGGGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 33845 | 0.7 | 0.260044 |
Target: 5'- cUCGCGCGGUCGCCG-GGaccaccgcaGGCCaucaaGGa -3' miRNA: 3'- -AGCGCGUUAGCGGCaCCa--------CCGGg----CCg -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 33666 | 0.66 | 0.45064 |
Target: 5'- -gGCuCAAUCGCC-UGGUGGagaCCgaGGCa -3' miRNA: 3'- agCGcGUUAGCGGcACCACCg--GG--CCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 33113 | 0.7 | 0.265842 |
Target: 5'- cUCGCGCAgugccgucacaagGUCGUCGaGGUGGCguUUGGUg -3' miRNA: 3'- -AGCGCGU-------------UAGCGGCaCCACCG--GGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 26972 | 0.67 | 0.404918 |
Target: 5'- aCGCGUGAgCGCCGggcaGGccGGCCaccuCGGCa -3' miRNA: 3'- aGCGCGUUaGCGGCa---CCa-CCGG----GCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 26102 | 0.77 | 0.084107 |
Target: 5'- gUGCGCGAgugaaCG-CGUGG-GGCCCGGCg -3' miRNA: 3'- aGCGCGUUa----GCgGCACCaCCGGGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 25647 | 0.69 | 0.286615 |
Target: 5'- cCGC-CGAUCGCgGUGGcGGUCCuGCc -3' miRNA: 3'- aGCGcGUUAGCGgCACCaCCGGGcCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 25513 | 0.7 | 0.24146 |
Target: 5'- -gGCGUGGUugaagcugaCGCCGUGccgcuGUGGCUCGGCc -3' miRNA: 3'- agCGCGUUA---------GCGGCAC-----CACCGGGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 25386 | 0.69 | 0.285925 |
Target: 5'- uUUGgGCAGgugguacUCGCUGUGcGccugcaGGCCCGGCa -3' miRNA: 3'- -AGCgCGUU-------AGCGGCAC-Ca-----CCGGGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 25058 | 0.7 | 0.272407 |
Target: 5'- aUCGUGCccgCGCUGcugaaccUGGUGGCCCcguuccucaguGGCg -3' miRNA: 3'- -AGCGCGuuaGCGGC-------ACCACCGGG-----------CCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 24482 | 0.69 | 0.307186 |
Target: 5'- -aGcCGaCGAUCGCCGcGGUGGCCucgucgaagacacCGGUg -3' miRNA: 3'- agC-GC-GUUAGCGGCaCCACCGG-------------GCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 23704 | 0.68 | 0.346056 |
Target: 5'- cUCGaCGUuc-CGCCGcGGcGGCaCCGGCg -3' miRNA: 3'- -AGC-GCGuuaGCGGCaCCaCCG-GGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 22658 | 0.69 | 0.307915 |
Target: 5'- aCGCGCGugCGCCGaGGUGaucaccgcGCuuGGCa -3' miRNA: 3'- aGCGCGUuaGCGGCaCCAC--------CGggCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 21921 | 0.67 | 0.413828 |
Target: 5'- gUCGgGCAAUC-CCGgcaauccGCCCGGCg -3' miRNA: 3'- -AGCgCGUUAGcGGCaccac--CGGGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 21871 | 0.66 | 0.473571 |
Target: 5'- aCGcCGCccGUgGCCGUacccgaccaaccaucGGUGGCCgCGGUc -3' miRNA: 3'- aGC-GCGu-UAgCGGCA---------------CCACCGG-GCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 21682 | 0.71 | 0.218419 |
Target: 5'- gCGCGCAucaucaccgggGUgGUCGgugcgGGUGGCgCUGGCa -3' miRNA: 3'- aGCGCGU-----------UAgCGGCa----CCACCG-GGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 20528 | 0.68 | 0.354079 |
Target: 5'- cUCGCcgGCcAUCGgCGcGGUGGCCCcuGCa -3' miRNA: 3'- -AGCG--CGuUAGCgGCaCCACCGGGc-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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