miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18940 3' -60.8 NC_004683.1 + 2116 0.69 0.307186
Target:  5'- gUCGUgGCcAUCGCCcugGUGGUGGCgggcguggccgugCUGGCg -3'
miRNA:   3'- -AGCG-CGuUAGCGG---CACCACCG-------------GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 25058 0.7 0.272407
Target:  5'- aUCGUGCccgCGCUGcugaaccUGGUGGCCCcguuccucaguGGCg -3'
miRNA:   3'- -AGCGCGuuaGCGGC-------ACCACCGGG-----------CCG- -5'
18940 3' -60.8 NC_004683.1 + 946 0.7 0.27307
Target:  5'- gCGCGUGAUcuucaaggcgCGCaccaacaGUGGUGGCCgUGGCu -3'
miRNA:   3'- aGCGCGUUA----------GCGg------CACCACCGG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 47475 0.7 0.27307
Target:  5'- aCGCGUcGUCacguguggGCCGUGGaGGCC-GGCa -3'
miRNA:   3'- aGCGCGuUAG--------CGGCACCaCCGGgCCG- -5'
18940 3' -60.8 NC_004683.1 + 52954 0.69 0.277079
Target:  5'- cUCGCGCAcgUGCgUGaGGUGGCCagaaagaagcgcaGGCg -3'
miRNA:   3'- -AGCGCGUuaGCG-GCaCCACCGGg------------CCG- -5'
18940 3' -60.8 NC_004683.1 + 47323 0.69 0.279777
Target:  5'- gUCGaGCAgGUCGCCGUGGUGuucaCCgCGGUc -3'
miRNA:   3'- -AGCgCGU-UAGCGGCACCACc---GG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 25647 0.69 0.286615
Target:  5'- cCGC-CGAUCGCgGUGGcGGUCCuGCc -3'
miRNA:   3'- aGCGcGUUAGCGgCACCaCCGGGcCG- -5'
18940 3' -60.8 NC_004683.1 + 12616 0.69 0.293583
Target:  5'- cUCGUGCGauucGUCGCCagccUGGCCgCGGCg -3'
miRNA:   3'- -AGCGCGU----UAGCGGcaccACCGG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 55512 0.69 0.300683
Target:  5'- aCGUGCAAUgGgUGUGGUGcGUCgaCGGCa -3'
miRNA:   3'- aGCGCGUUAgCgGCACCAC-CGG--GCCG- -5'
18940 3' -60.8 NC_004683.1 + 40295 0.7 0.266493
Target:  5'- gCGCGCuggcAUCGCCGaGGgcaucGCCgCGGCg -3'
miRNA:   3'- aGCGCGu---UAGCGGCaCCac---CGG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 33113 0.7 0.265842
Target:  5'- cUCGCGCAgugccgucacaagGUCGUCGaGGUGGCguUUGGUg -3'
miRNA:   3'- -AGCGCGU-------------UAGCGGCaCCACCG--GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 33845 0.7 0.260044
Target:  5'- cUCGCGCGGUCGCCG-GGaccaccgcaGGCCaucaaGGa -3'
miRNA:   3'- -AGCGCGUUAGCGGCaCCa--------CCGGg----CCg -5'
18940 3' -60.8 NC_004683.1 + 52177 0.85 0.02135
Target:  5'- gUUGCGCGAUCuGCCGUGGUGGCUCGa- -3'
miRNA:   3'- -AGCGCGUUAG-CGGCACCACCGGGCcg -5'
18940 3' -60.8 NC_004683.1 + 26102 0.77 0.084107
Target:  5'- gUGCGCGAgugaaCG-CGUGG-GGCCCGGCg -3'
miRNA:   3'- aGCGCGUUa----GCgGCACCaCCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 20078 0.74 0.148153
Target:  5'- uUCGCaCAGUCGa--UGGUGGCCuCGGCg -3'
miRNA:   3'- -AGCGcGUUAGCggcACCACCGG-GCCG- -5'
18940 3' -60.8 NC_004683.1 + 13000 0.72 0.182622
Target:  5'- -aGCGCGGcuuccUGCCGggcgccGGUGGcCCCGGCg -3'
miRNA:   3'- agCGCGUUa----GCGGCa-----CCACC-GGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 51210 0.71 0.218419
Target:  5'- -aGCGCGAgCGCCccuGUGGcgucgaacgGGCUCGGCa -3'
miRNA:   3'- agCGCGUUaGCGG---CACCa--------CCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 21682 0.71 0.218419
Target:  5'- gCGCGCAucaucaccgggGUgGUCGgugcgGGUGGCgCUGGCa -3'
miRNA:   3'- aGCGCGU-----------UAgCGGCa----CCACCG-GGCCG- -5'
18940 3' -60.8 NC_004683.1 + 25513 0.7 0.24146
Target:  5'- -gGCGUGGUugaagcugaCGCCGUGccgcuGUGGCUCGGCc -3'
miRNA:   3'- agCGCGUUA---------GCGGCAC-----CACCGGGCCG- -5'
18940 3' -60.8 NC_004683.1 + 426 0.7 0.253723
Target:  5'- -gGCGCAG--GCgGUGGcUGGCgCGGCg -3'
miRNA:   3'- agCGCGUUagCGgCACC-ACCGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.