Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18940 | 3' | -60.8 | NC_004683.1 | + | 41045 | 0.68 | 0.362232 |
Target: 5'- gCGCGCGgccagGUCGgCGUGGccgacgGGCaaCGGCg -3' miRNA: 3'- aGCGCGU-----UAGCgGCACCa-----CCGg-GCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 51882 | 0.68 | 0.354079 |
Target: 5'- cCGCGCGAU--CCGUGaUGGCgCCGGa -3' miRNA: 3'- aGCGCGUUAgcGGCACcACCG-GGCCg -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 20528 | 0.68 | 0.354079 |
Target: 5'- cUCGCcgGCcAUCGgCGcGGUGGCCCcuGCa -3' miRNA: 3'- -AGCG--CGuUAGCgGCaCCACCGGGc-CG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 8112 | 0.68 | 0.346056 |
Target: 5'- gUCGCGC--UCGaCCGcGGUGcGCaucaCCGGCu -3' miRNA: 3'- -AGCGCGuuAGC-GGCaCCAC-CG----GGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 18630 | 0.68 | 0.346056 |
Target: 5'- gUCGUGC--UgGCCcUGGUGggguucuucguGCCCGGCg -3' miRNA: 3'- -AGCGCGuuAgCGGcACCAC-----------CGGGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 23704 | 0.68 | 0.346056 |
Target: 5'- cUCGaCGUuc-CGCCGcGGcGGCaCCGGCg -3' miRNA: 3'- -AGC-GCGuuaGCGGCaCCaCCG-GGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 34049 | 0.68 | 0.346056 |
Target: 5'- cUCGCGCca-CGCUGcaggcccaUGauGUGGUCCGGCa -3' miRNA: 3'- -AGCGCGuuaGCGGC--------AC--CACCGGGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 55171 | 0.68 | 0.338164 |
Target: 5'- -aGcCGCAuacGUCGCCGUagcggaacgaGGUGaGgCCGGCg -3' miRNA: 3'- agC-GCGU---UAGCGGCA----------CCAC-CgGGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 37273 | 0.68 | 0.338164 |
Target: 5'- gCGCGCAAaCGCCGgauugucuuggugGGUgcggagcgauugcgcGGCgCGGCg -3' miRNA: 3'- aGCGCGUUaGCGGCa------------CCA---------------CCGgGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 13115 | 0.68 | 0.333492 |
Target: 5'- -gGCGUugaaucccacccggaAGUCGCCG-GGgccaccgGcGCCCGGCa -3' miRNA: 3'- agCGCG---------------UUAGCGGCaCCa------C-CGGGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 8153 | 0.68 | 0.330403 |
Target: 5'- aCGCGCucggCGCCGaGGccgcgaaGGCCgCGGCc -3' miRNA: 3'- aGCGCGuua-GCGGCaCCa------CCGG-GCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 47148 | 0.68 | 0.330403 |
Target: 5'- cUCGaCGuCGAUCGUCG-GGUGG-CCGuGCa -3' miRNA: 3'- -AGC-GC-GUUAGCGGCaCCACCgGGC-CG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 6653 | 0.68 | 0.330403 |
Target: 5'- cUGC-CAucgaCGCCGUGcUGGCCgCGGCg -3' miRNA: 3'- aGCGcGUua--GCGGCACcACCGG-GCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 6364 | 0.69 | 0.315279 |
Target: 5'- aCGUGCcc-CG-CGUGGUGcGcCCCGGCg -3' miRNA: 3'- aGCGCGuuaGCgGCACCAC-C-GGGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 18175 | 0.69 | 0.315279 |
Target: 5'- aUCGUGCcgaucugauaGGUgGCCGUGGU-GCCCgccggGGCg -3' miRNA: 3'- -AGCGCG----------UUAgCGGCACCAcCGGG-----CCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 51647 | 0.69 | 0.315279 |
Target: 5'- gUCGCGC---UGCCGggguucguUGGUGGCCaGGUc -3' miRNA: 3'- -AGCGCGuuaGCGGC--------ACCACCGGgCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 22658 | 0.69 | 0.307915 |
Target: 5'- aCGCGCGugCGCCGaGGUGaucaccgcGCuuGGCa -3' miRNA: 3'- aGCGCGUuaGCGGCaCCAC--------CGggCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 24482 | 0.69 | 0.307186 |
Target: 5'- -aGcCGaCGAUCGCCGcGGUGGCCucgucgaagacacCGGUg -3' miRNA: 3'- agC-GC-GUUAGCGGCaCCACCGG-------------GCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 2116 | 0.69 | 0.307186 |
Target: 5'- gUCGUgGCcAUCGCCcugGUGGUGGCgggcguggccgugCUGGCg -3' miRNA: 3'- -AGCG-CGuUAGCGG---CACCACCG-------------GGCCG- -5' |
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18940 | 3' | -60.8 | NC_004683.1 | + | 55512 | 0.69 | 0.300683 |
Target: 5'- aCGUGCAAUgGgUGUGGUGcGUCgaCGGCa -3' miRNA: 3'- aGCGCGUUAgCgGCACCAC-CGG--GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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