Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18940 | 5' | -51.6 | NC_004683.1 | + | 49320 | 0.66 | 0.912313 |
Target: 5'- -aGCCGAggGCGCcccGGAcguguGGUUGcUGGCCGa -3' miRNA: 3'- caCGGCUa-UGUG---CCU-----CCAAC-AUUGGC- -5' |
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18940 | 5' | -51.6 | NC_004683.1 | + | 9537 | 0.66 | 0.898706 |
Target: 5'- -cGCCGu--CGCcGAGGUUGUaGACCu -3' miRNA: 3'- caCGGCuauGUGcCUCCAACA-UUGGc -5' |
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18940 | 5' | -51.6 | NC_004683.1 | + | 52072 | 0.66 | 0.898706 |
Target: 5'- -gGCUGAUcgucgACGCgGGAGGcgaccgGUGACCGc -3' miRNA: 3'- caCGGCUA-----UGUG-CCUCCaa----CAUUGGC- -5' |
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18940 | 5' | -51.6 | NC_004683.1 | + | 47698 | 0.66 | 0.891481 |
Target: 5'- uUGcCCGAU-UGCGGGGuGUgcUGUGACCGc -3' miRNA: 3'- cAC-GGCUAuGUGCCUC-CA--ACAUUGGC- -5' |
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18940 | 5' | -51.6 | NC_004683.1 | + | 43424 | 0.66 | 0.883983 |
Target: 5'- -cGCCGAcUGCAUGGAaucGGgcaaGUGGCCu -3' miRNA: 3'- caCGGCU-AUGUGCCU---CCaa--CAUUGGc -5' |
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18940 | 5' | -51.6 | NC_004683.1 | + | 15977 | 0.68 | 0.824358 |
Target: 5'- -cGCCGAccuCAUGGAGGcaucgGgcACCGa -3' miRNA: 3'- caCGGCUau-GUGCCUCCaa---CauUGGC- -5' |
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18940 | 5' | -51.6 | NC_004683.1 | + | 20990 | 0.69 | 0.764963 |
Target: 5'- -cGUCGAUcgcccACACGGGGGccagcgaUGUGGCCa -3' miRNA: 3'- caCGGCUA-----UGUGCCUCCa------ACAUUGGc -5' |
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18940 | 5' | -51.6 | NC_004683.1 | + | 45476 | 0.7 | 0.722366 |
Target: 5'- -cGCUGGUugGCGGucagGGGUggccGUGACCa -3' miRNA: 3'- caCGGCUAugUGCC----UCCAa---CAUUGGc -5' |
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18940 | 5' | -51.6 | NC_004683.1 | + | 18623 | 0.72 | 0.59977 |
Target: 5'- -gGCUGAUgGCGcCGGuuGGGUUGUAACCa -3' miRNA: 3'- caCGGCUA-UGU-GCC--UCCAACAUUGGc -5' |
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18940 | 5' | -51.6 | NC_004683.1 | + | 20478 | 0.72 | 0.59977 |
Target: 5'- -aGCCGG-AgGCGGAGGUgg-GGCCGg -3' miRNA: 3'- caCGGCUaUgUGCCUCCAacaUUGGC- -5' |
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18940 | 5' | -51.6 | NC_004683.1 | + | 44882 | 1.1 | 0.002226 |
Target: 5'- aGUGCCGAUACACGGAGGUUGUAACCGa -3' miRNA: 3'- -CACGGCUAUGUGCCUCCAACAUUGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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