miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18941 3' -56.5 NC_004683.1 + 24365 0.66 0.688467
Target:  5'- --aGCCGUCGA--CCgGGCcCAUGAGc -3'
miRNA:   3'- ggaCGGCAGCUuuGGgCCGaGUGCUU- -5'
18941 3' -56.5 NC_004683.1 + 42734 0.66 0.688467
Target:  5'- --cGCUGUCGguAUCCGGC--GCGAAg -3'
miRNA:   3'- ggaCGGCAGCuuUGGGCCGagUGCUU- -5'
18941 3' -56.5 NC_004683.1 + 25931 0.66 0.677703
Target:  5'- gCCaGCCGUCGcGAACCCaGGUggcgCACa-- -3'
miRNA:   3'- -GGaCGGCAGC-UUUGGG-CCGa---GUGcuu -5'
18941 3' -56.5 NC_004683.1 + 43891 0.66 0.666897
Target:  5'- cCCUaCCG-CGAcACCCGGCgCGCGu- -3'
miRNA:   3'- -GGAcGGCaGCUuUGGGCCGaGUGCuu -5'
18941 3' -56.5 NC_004683.1 + 25760 0.66 0.656058
Target:  5'- gCUGCCGUCGAGcACgCUGGC-CGaGGAg -3'
miRNA:   3'- gGACGGCAGCUU-UG-GGCCGaGUgCUU- -5'
18941 3' -56.5 NC_004683.1 + 48837 0.66 0.645198
Target:  5'- aCUUGCaCGUagucagcaGAAGCaCCGGuCUCACGGc -3'
miRNA:   3'- -GGACG-GCAg-------CUUUG-GGCC-GAGUGCUu -5'
18941 3' -56.5 NC_004683.1 + 5534 0.66 0.645198
Target:  5'- --cGCCGguggCGAcGACCUGGCggGCGAAa -3'
miRNA:   3'- ggaCGGCa---GCU-UUGGGCCGagUGCUU- -5'
18941 3' -56.5 NC_004683.1 + 48060 0.68 0.558679
Target:  5'- gCUGCaCGUCG-AACCCGcGCUCGa--- -3'
miRNA:   3'- gGACG-GCAGCuUUGGGC-CGAGUgcuu -5'
18941 3' -56.5 NC_004683.1 + 43935 0.69 0.506187
Target:  5'- aCUcGCCGUUGAcACCgGGCUCGagacCGAGc -3'
miRNA:   3'- gGA-CGGCAGCUuUGGgCCGAGU----GCUU- -5'
18941 3' -56.5 NC_004683.1 + 21141 0.69 0.485775
Target:  5'- gCUGCUGguccCGAAcauCCCGGC-CGCGGAc -3'
miRNA:   3'- gGACGGCa---GCUUu--GGGCCGaGUGCUU- -5'
18941 3' -56.5 NC_004683.1 + 394 0.69 0.462797
Target:  5'- gCCUGCUGgcCGAGaaccgucuccaugcGCCCGGC-CGCGGu -3'
miRNA:   3'- -GGACGGCa-GCUU--------------UGGGCCGaGUGCUu -5'
18941 3' -56.5 NC_004683.1 + 9541 0.69 0.455918
Target:  5'- gCCUcGCCGUCGccgagguuguAGACCUGacuGCUCAUGAAu -3'
miRNA:   3'- -GGA-CGGCAGC----------UUUGGGC---CGAGUGCUU- -5'
18941 3' -56.5 NC_004683.1 + 33929 0.7 0.446186
Target:  5'- gCCUGCgGUgGu--CCCGGCgaccgCGCGAGc -3'
miRNA:   3'- -GGACGgCAgCuuuGGGCCGa----GUGCUU- -5'
18941 3' -56.5 NC_004683.1 + 47524 0.7 0.436572
Target:  5'- aCCUGCgCGUCGGGuuucguCCCGGcCUUGCGc- -3'
miRNA:   3'- -GGACG-GCAGCUUu-----GGGCC-GAGUGCuu -5'
18941 3' -56.5 NC_004683.1 + 44855 0.7 0.436572
Target:  5'- --cGCCGUgGugGCCCGGC-CugGAGg -3'
miRNA:   3'- ggaCGGCAgCuuUGGGCCGaGugCUU- -5'
18941 3' -56.5 NC_004683.1 + 13267 0.7 0.42144
Target:  5'- --cGCCGUCGAccGcagcggauaucuacaGCCCGGCgaaCACGAAc -3'
miRNA:   3'- ggaCGGCAGCU--U---------------UGGGCCGa--GUGCUU- -5'
18941 3' -56.5 NC_004683.1 + 30647 0.7 0.417707
Target:  5'- -aUGUgGUCGAGACUCGGaCUUGCGGGa -3'
miRNA:   3'- ggACGgCAGCUUUGGGCC-GAGUGCUU- -5'
18941 3' -56.5 NC_004683.1 + 1617 0.71 0.372796
Target:  5'- uCUUGCCGUccucgCGAuACCCGGC-CACGc- -3'
miRNA:   3'- -GGACGGCA-----GCUuUGGGCCGaGUGCuu -5'
18941 3' -56.5 NC_004683.1 + 24193 0.74 0.258749
Target:  5'- gCCUGCCGcUC-AAGCUCGGCUCAucCGAc -3'
miRNA:   3'- -GGACGGC-AGcUUUGGGCCGAGU--GCUu -5'
18941 3' -56.5 NC_004683.1 + 44942 1.08 0.000996
Target:  5'- gCCUGCCGUCGAAACCCGGCUCACGAAa -3'
miRNA:   3'- -GGACGGCAGCUUUGGGCCGAGUGCUU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.